DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment esc and Eed

DIOPT Version :9

Sequence 1:NP_477431.1 Gene:esc / 34595 FlyBaseID:FBgn0000588 Length:425 Species:Drosophila melanogaster
Sequence 2:NP_001099748.1 Gene:Eed / 293104 RGDID:1309782 Length:441 Species:Rattus norvegicus


Alignment Length:422 Identity:217/422 - (51%)
Similarity:299/422 - (70%) Gaps:8/422 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSSDKVKNGNEPEESEESCGDESASYTTNSTTSRSKSPSSSTRSKRR---GRRSTKSKPKSRAAY 62
            :|||  :|.|.....:|:  |::.|..:.:.|.|..:|:::..:..|   |:...||| |.:.::
  Rat    23 LSSD--ENSNPDLSGDEN--DDAVSIESGTNTERPDTPTNTPNAPGRKSWGKGKWKSK-KCKYSF 82

  Fly    63 KYDTHVKENHGANIFGVAFNTLLGKDEPQVFATAGSNRVTVYECPRQGGMQLLHCYADPDPDEVF 127
            |....:||:|...:|||.||....:.:|.||||.||||||:|||..||.::||..|.|.|.||.|
  Rat    83 KCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENF 147

  Fly   128 YTCAWSYDLKTSSPLLAAAGYRGVIRVIDVEQNEAVGNYIGHGQAINELKFHPHKLQLLLSGSKD 192
            |||||:||..||.||||.||.||:||:|:....:.:.:|:|||.|||||||||....||||.|||
  Rat   148 YTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKD 212

  Fly   193 HAIRLWNIQSHVCIAILGGVEGHRDEVLSIDFNMRGDRIVSSGMDHSLKLWCLNTPEFHHKIELS 257
            ||:||||||:...:||.||||||||||||.|:::.|::|:|.|||||||||.:|:....:.|:.|
  Rat   213 HALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKES 277

  Fly   258 NTFSQEKSTLPFPTVTKHFPDFSTRDIHRNYVDCVQWFGNFVLSKSCENAIVCWKPGQLHQSFEQ 322
            ..::..|:..||.:...||||||||||||||||||:|.|:.:|||||||||||||||::....::
  Rat   278 YDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDK 342

  Fly   323 VKPSDSSCTIIAEFEYDECEIWFVRFGFNPWQKVIALGNQQGKVYVWELDPSDPEGAHMTTLHNS 387
            :|||:|:.||:..|:|.:|:||::||..:.|||::|||||.||:|||:|:..||..|..|||.:.
  Rat   343 IKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHH 407

  Fly   388 RSVATVRQIAFSRDASVLVYVCDDATVWRWNR 419
            :..|.:||.:||||:|:|:.|||||::|||:|
  Rat   408 KCGAAIRQTSFSRDSSILIAVCDDASIWRWDR 439

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
escNP_477431.1 WD40 <67..425 CDD:225201 199/353 (56%)
WD40 72..418 CDD:295369 195/345 (57%)
WD40 repeat 76..122 CDD:293791 25/45 (56%)
WD40 repeat 128..168 CDD:293791 21/39 (54%)
WD40 repeat 173..210 CDD:293791 25/36 (69%)
WD40 repeat 220..282 CDD:293791 27/61 (44%)
WD40 repeat 289..337 CDD:293791 27/47 (57%)
WD40 repeat 345..386 CDD:293791 22/40 (55%)
WD40 repeat 393..417 CDD:293791 14/23 (61%)
EedNP_001099748.1 WD40 repeat 96..140 CDD:293791 24/43 (56%)
WD40 repeat 148..188 CDD:293791 21/39 (54%)
WD40 150..438 CDD:421866 163/287 (57%)
WD40 repeat 193..230 CDD:293791 25/36 (69%)
WD40 repeat 240..302 CDD:293791 27/61 (44%)
WD40 repeat 309..357 CDD:293791 27/47 (57%)
WD40 repeat 365..405 CDD:293791 21/39 (54%)
WD40 repeat 413..437 CDD:293791 14/23 (61%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166334923
Domainoid 1 1.000 236 1.000 Domainoid score I2264
eggNOG 1 0.900 - - E1_KOG1034
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2814
Inparanoid 1 1.050 488 1.000 Inparanoid score I1367
OMA 1 1.010 - - QHG59795
OrthoDB 1 1.010 - - D1191277at2759
OrthoFinder 1 1.000 - - FOG0005723
OrthoInspector 1 1.000 - - otm45350
orthoMCL 1 0.900 - - OOG6_102885
Panther 1 1.100 - - O PTHR10253
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X4715
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1615.770

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