DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pde1c and Pde1a

DIOPT Version :9

Sequence 1:NP_001137817.1 Gene:Pde1c / 34594 FlyBaseID:FBgn0264815 Length:1173 Species:Drosophila melanogaster
Sequence 2:NP_110498.1 Gene:Pde1a / 81529 RGDID:68329 Length:542 Species:Rattus norvegicus


Alignment Length:473 Identity:233/473 - (49%)
Similarity:319/473 - (67%) Gaps:34/473 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly   662 RLADEDDELSEVQPDAVPPEVREWLASTFTRQMATSRRKSDEKPKFRSVAHAIRAGIFVDRMYRR 726
            ||.|.:||||::|.|:||.|||:||||||||:|..:::|.:|||||||:.||::|||||:||||:
  Rat    73 RLLDTEDELSDIQTDSVPSEVRDWLASTFTRKMGMTKKKPEEKPKFRSIVHAVQAGIFVERMYRK 137

  Fly   727 VSSSALTAFPPDVVRLLKNLDDWTFDVFALTEAASGQVVKYVAYELFNRYGSIHKFKIAPGILEA 791
            ........:|..|:..||.:|.|:||||||.||:....:|::.||||.....|::|||....|.|
  Rat   138 NYHMVGLTYPAAVIVTLKEVDKWSFDVFALNEASGEHSLKFMIYELFTSNDLINRFKIPVSCLIA 202

  Fly   792 FLHRVEEGYCRYRNPYHNNLHAVDVMQTIHYCLCNTGLMNWLTDLEIFASLLAALLHDYEHTGTT 856
            |...:|.||.:::|||||.:||.||.||:||.:.:||:|:|||:|||.|.:.||.:|||||||||
  Rat   203 FAEALEVGYSKHKNPYHNLVHAADVTQTVHYIMLHTGIMHWLTELEILAMVFAAAVHDYEHTGTT 267

  Fly   857 NNFHVMSGSETALLYNDRAVLENHHASASFRLLREDEYNILSHLSREEFRELRGLVIEMVLGTDM 921
            ||||:.:.|:.|:|||||:||||||.||::||::|:|.|||.:||::::|:||.||||.||.|||
  Rat   268 NNFHIQTRSDVAILYNDRSVLENHHVSAAYRLMQEEEMNILVNLSKDDWRDLRNLVIETVLATDM 332

  Fly   922 TNHFQQMKAMRQLLTLQEATIDKQKVLSLVLHCCDISHPAKQWGVHHRWTMLLLEEFFRQGDLEK 986
            :.||||:|.:|..|...|. ||:.|.:||:||..|||||||.|.:|:||||.|:||||.|||.|.
  Rat   333 SGHFQQIKNIRSSLQQPEG-IDRAKTMSLILHAADISHPAKTWKLHYRWTMALMEEFFLQGDKEA 396

  Fly   987 ELGLPFSPLCDRNNTLVAESQICFIDFIVEPSMGVMSDMLELILAPIAPMNKSKPATLVEHETTA 1051
            ||||||||||||.:|:||:|||.||||||||:..:::|..|.|:.|           |:|..:..
  Rat   397 ELGLPFSPLCDRKSTMVAQSQIGFIDFIVEPTFSLLTDSTEKIVIP-----------LIEEASKP 450

  Fly  1052 NSTTNSAIVIPNSGITPSMDKPRDHRTEA--KTTAAECLARKSVTGTTASKFNIP----KPWLTC 1110
            .|:        |.|.:.|......|..:|  ::....|::    .||.|..:::.    |.:...
  Rat   451 ESS--------NYGASSSSTMIGFHVADALRRSNTKGCMS----DGTYAPDYSLSAVDLKSFKNN 503

  Fly  1111 LV----ENKRIWKEQAVK 1124
            ||    :||..|||.|.:
  Rat   504 LVDIIQQNKERWKELAAQ 521

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pde1cNP_001137817.1 PDEase_I_N 666..722 CDD:285672 35/55 (64%)
PDEase_I 807..1026 CDD:278654 136/218 (62%)
Pde1aNP_110498.1 PDEase_I_N 77..133 CDD:285672 35/55 (64%)
PDEase_I 218..434 CDD:278654 135/216 (63%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 305 1.000 Domainoid score I1318
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H21043
Inparanoid 1 1.050 539 1.000 Inparanoid score I1143
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D439875at33208
OrthoFinder 1 1.000 - - FOG0001902
OrthoInspector 1 1.000 - - otm45227
orthoMCL 1 0.900 - - OOG6_100946
Panther 1 1.100 - - LDO PTHR11347
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X171
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1211.970

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