DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pde1c and pde9aa

DIOPT Version :9

Sequence 1:NP_001137817.1 Gene:Pde1c / 34594 FlyBaseID:FBgn0264815 Length:1173 Species:Drosophila melanogaster
Sequence 2:XP_009302928.1 Gene:pde9aa / 799942 ZFINID:ZDB-GENE-130920-1 Length:509 Species:Danio rerio


Alignment Length:409 Identity:109/409 - (26%)
Similarity:189/409 - (46%) Gaps:52/409 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   661 TRLADEDDELSEVQPDAVPPEVREW----LASTFTRQMATSRRKSD-------EKPKFRSVAHAI 714
            ::|||:::....|.........|.:    |.:..|.::|...::.:       |..|.||....:
Zfish    82 SQLADKEELFQNVLTQVAEQFSRAFKINELKTEVTNRLAMLEKRVELEGMKVVEIEKCRSDIKKL 146

  Fly   715 RAGIFVDRMYRRVSSSAL------------TAFP-----PDVVRLLKN--LDDWTFDVFALTEAA 760
            |     :.|..|.:||.|            .::|     .|.|..||.  .|.|.::        
Zfish   147 R-----EEMASRNNSSFLEDNKKLTPRRDVPSYPKYHLSQDTVEALKQPLFDVWQWE-------- 198

  Fly   761 SGQVVKYVAYELFNRYGSIHKFKIAPGILEAFLHRVEEGYCRYRNPYHNNLHAVDVMQTIHYCLC 825
            |.:::..:.: :::..|.:..|.|.|..|:.:|..:.:.|  ..||:||..|...|.|.::..:.
Zfish   199 SNEMLSCLEH-MYHDLGLVKDFNINPITLKRWLLCIHDNY--RNNPFHNFRHCFCVTQMMYSMIY 260

  Fly   826 NTGLMNWLTDLEIFASLLAALLHDYEHTGTTNNFHVMSGSETALLYNDRAVLENHHASASFRLLR 890
            ..||....|.::|...:.||:.||.:|.|..|.:.:.:.:|.|:.|||.:.|||||.:.:|::..
Zfish   261 LCGLQEKFTQVDILILMTAAVCHDLDHPGYNNTYQINARTELAVRYNDISPLENHHCAVAFQIFS 325

  Fly   891 EDEYNILSHLSREEFRELRGLVIEMVLGTDMTNHFQQMKAMRQLLTLQEATIDKQ-KVLSLVL-H 953
            :.:.||.:....|.|:::|...|.::|.|||..|.:.|.:.:|.:...:...::. ..|.:|| .
Zfish   326 QPDCNIFASFDPEAFKQIRQGTITLILATDMARHGEIMDSFKQKVDSFDYNNEEHVTCLKMVLIK 390

  Fly   954 CCDISHPAKQWGVHHRWTMLLLEEFFRQGDLEKELGLPFSPLCDRNNTLVAESQICFIDFIVEPS 1018
            |||||:..:...|...|...||||:|.|.|.||..|||.:|..||.......:||.||.|::.|.
Zfish   391 CCDISNEVRPMEVAEPWVDCLLEEYFMQSDREKAEGLPVAPFMDREKVTKPTAQIGFIKFVLIPM 455

  Fly  1019 ----MGVMSDMLELILAPI 1033
                |.:...:.|:::.|:
Zfish   456 FETVMKLFPQIEEVMVQPL 474

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pde1cNP_001137817.1 PDEase_I_N 666..722 CDD:285672 10/66 (15%)
PDEase_I 807..1026 CDD:278654 72/224 (32%)
pde9aaXP_009302928.1 PDEase_I 242..472 CDD:278654 73/229 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D904682at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.920

Return to query results.
Submit another query.