DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pde1c and dnc

DIOPT Version :9

Sequence 1:NP_001137817.1 Gene:Pde1c / 34594 FlyBaseID:FBgn0264815 Length:1173 Species:Drosophila melanogaster
Sequence 2:NP_726846.1 Gene:dnc / 31309 FlyBaseID:FBgn0000479 Length:1209 Species:Drosophila melanogaster


Alignment Length:1241 Identity:286/1241 - (23%)
Similarity:428/1241 - (34%) Gaps:424/1241 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   168 ASGGPGSSGGTSGAATSSSSSGGGAASGAASGSVGPASGTAT---------------GTGSASGG 217
            |:||.|..||       |.|.|||..||:.|||....|...|               |.|||:..
  Fly    52 ATGGVGGGGG-------SGSGGGGCGSGSGSGSGKRKSKARTKCFGGTVFRCCLPCRGGGSAAPA 109

  Fly   218 AGGVSTPAQ--------------------------------EAASPTV--SEL-----SGSGSNA 243
            .....||||                                :..:.||  |||     :|.|:..
  Fly   110 TSPPQTPAQTPDELKVIPEDCNLEKSAEQKRDLLERNNKEDDLLNRTVSGSELDLYGGAGGGTKK 174

  Fly   244 -----TINGQVARHGSL-TIIRRTNSRNFTQFDGQLASPSSTACSSTAPGIGFAQTPLSEPLAER 302
                 ||:..|....|| |:|...:.    :.|.|| |.:..|.:|.|.|:          :|.|
  Fly   175 HSLADTIDTSVTTPISLKTLINDVDE----ELDQQL-SAADIAAASLASGL----------VARR 224

  Fly   303 LSFRASGGSNGSASAGDSRSSNQGPSNSGPAASAAVKMQPSSPNATNYLADNIQISSANLSQTEM 367
            ........::.|.:|...:...|......|...:.....|||.|.              |||..:
  Fly   225 AEPETLSDASVSPTAVVQQQQQQQQQLQQPLLQSQPHFVPSSGNI--------------LSQVTL 275

  Fly   368 VVGRDSADYTAMHSINVGVGNSFLRGDTDIPQESGHSFETPS-NMSFTAGQWDTESLPPVDTPDA 431
            ..|.:.:......::.       .:|....|..:.:....|: |....:.|..|..||.:...:.
  Fly   276 YSGSNPSTNPCQSAVQ-------NQGQNSNPNPNQNPNTNPNQNQQRCSCQPQTSPLPHIKEEEE 333

  Fly   432 LNKAAGRIRSLLRRMDHE------TVAYEDMQRNLHYAARVLEAVFIDESREGCNGNCKNLNCSR 490
            .::|..:.::.|:  :|:      |:|                        .|..|:|::::   
  Fly   334 SDQANFKHQTSLK--EHQPLPPPITIA------------------------TGYCGSCESVH--- 369

  Fly   491 HSHGRDDQQQDNNNSNRSCSLQEASPGG-------AGAGVTP----------------------- 525
            ||            |..|.|.....|||       ||...||                       
  Fly   370 HS------------SATSSSAGTVPPGGQQTQEYIAGTSSTPSPRIKLKFRKPHKSCWSRIVLAP 422

  Fly   526 --------------GADNQDSI--ESRTKGVSQAPQTHSG-----------------PTGPPSNT 557
                          |:::.:::  .|.|.|.:...|..|.                 .|..|||:
  Fly   423 IGSAGGSSSATTVIGSNSNETLASSSTTGGTATTTQNSSSVSVAAHHRLTSSSASALATSHPSNS 487

  Fly   558 SSETIAQPAPKLQP---------------------ALETVRESVMEESPSKDPGDKGPP------ 595
            .    ..|..|:|.                     .|..||..|.....::.|.:.|.|      
  Fly   488 Q----LLPTSKMQAEQGSIGDLQKYHSRYLKNRRHTLANVRFDVENGQGARSPLEGGSPSAGLVL 548

  Fly   596 --------------------PPASTS-------------------------------------TL 603
                                .|.|.|                                     :|
  Fly   549 QNLPQRRESFLYRSDSDFEMSPKSMSRNSSIASERFKEQEASILVDRSHGEDLIVTPFAQILASL 613

  Fly   604 TSQTTTSSSATAEPSAKAAE--SQAGSAGSSGSCSNPAAV------HRQRRLRTPT-----WA-- 653
            .|......|.|..|::..:.  :|:.||..||   ||...      ....||.|.|     |.  
  Fly   614 RSVRNNLLSLTNVPASNKSRRPNQSSSASRSG---NPPGAPLSQGEEAYTRLATDTIEELDWCLD 675

  Fly   654 --------RSMSTN-----KTRLADEDDELSEVQPDAVPPEVREWLASTFTRQMATSRRKSDEKP 705
                    ||:|..     |..|..|....||.....  .::.|::.|||     ..:::..:.|
  Fly   676 QLETIQTHRSVSDMASLKFKRMLNKELSHFSESSRSG--NQISEYICSTF-----LDKQQEFDLP 733

  Fly   706 KFR------SVAHAIRAGIFVDRMYRRVSS------------------------SALTAFPPDVV 740
            ..|      .||....||......|.|..|                        ..|..|..:..
  Fly   734 SLRVEDNPELVAANAAAGQQSAGQYARSRSPRGPPMSQISGVKRPLSHTNSFTGERLPTFGVETP 798

  Fly   741 R------LLKNLDDWTFDVFALTEAASGQVVKYVAYELFNRYGSIHKFKIAPGILEAFLHRVEEG 799
            |      ||..||.|...:|::.|.:..:.:..|||.:|.....:....|.|.....|:..:|:.
  Fly   799 RENELGTLLGELDTWGIQIFSIGEFSVNRPLTCVAYTIFQSRELLTSLMIPPKTFLNFMSTLEDH 863

  Fly   800 YCRYRNPYHNNLHAVDVMQTIHYCLCNTGLMNWLTDLEIFASLLAALLHDYEHTGTTNNFHVMSG 864
            |.: .||:||:|||.||.|:.:..|....|....|.||:..:|.||.:||.:|.|.||.|.|.|.
  Fly   864 YVK-DNPFHNSLHAADVTQSTNVLLNTPALEGVFTPLEVGGALFAACIHDVDHPGLTNQFLVNSS 927

  Fly   865 SETALLYNDRAVLENHHASASFRLLREDEYNILSHLSREEFRELRGLVIEMVLGTDMTNHFQQMK 929
            ||.||:|||.:||||||.:.:|:||:....:|..::.:::.:.||.:||::||.|||:.|   |.
  Fly   928 SELALMYNDESVLENHHLAVAFKLLQNQGCDIFCNMQKKQRQTLRKMVIDIVLSTDMSKH---MS 989

  Fly   930 AMRQLLTLQEAT-------------IDKQKVLSLVLHCCDISHPAKQWGVHHRWTMLLLEEFFRQ 981
            .:..|.|:.|..             .|:.:||..::||.|:|:|.|...::.||..||:||||.|
  Fly   990 LLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTKPLPLYKRWVALLMEEFFLQ 1054

  Fly   982 GDLEKELGLPFSPLCDRNNTLVAESQICFIDFIVEPSMGVMSDMLELILAPIAPMNKSKPATLVE 1046
            ||.|:|.|:..||:|||:|..:.:||:.|||:||.|.....:|:       :.|..:....||.|
  Fly  1055 GDKERESGMDISPMCDRHNATIEKSQVGFIDYIVHPLWETWADL-------VHPDAQDILDTLEE 1112

  Fly  1047 HETTANSTTNSAIVIPNSGITPSMDK-PRDHRTEAKTTAAEC----LAR-------------KSV 1093
            :.....|      :||.|.....:|: |::.|...:.|..|.    ||.             ...
  Fly  1113 NRDYYQS------MIPPSPPPSGVDENPQEDRIRFQVTLEESDQENLAELEEGDESGGESTTTGT 1171

  Fly  1094 TGTTAS 1099
            |||||:
  Fly  1172 TGTTAA 1177

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pde1cNP_001137817.1 PDEase_I_N 666..722 CDD:285672 13/61 (21%)
PDEase_I 807..1026 CDD:278654 94/231 (41%)
dncNP_726846.1 PDEase_I 870..1111 CDD:278654 96/250 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 82 1.000 Domainoid score I1950
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D439875at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm46491
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11347
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X171
66.020

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