DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pde1c and Pde7a

DIOPT Version :9

Sequence 1:NP_001137817.1 Gene:Pde1c / 34594 FlyBaseID:FBgn0264815 Length:1173 Species:Drosophila melanogaster
Sequence 2:NP_001116231.1 Gene:Pde7a / 18583 MGIID:1202402 Length:482 Species:Mus musculus


Alignment Length:348 Identity:113/348 - (32%)
Similarity:170/348 - (48%) Gaps:29/348 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly   696 TSRRKSDEKPKFR----------SV-AHAIRAGIFVDRMYR--RVSSSALTAFPPDVVR------ 741
            |.||.|.....||          || |..||..:...|..|  ||...|......|::.      
Mouse    79 TERRGSHPYIDFRIFHSQSDIEASVSARNIRRLLSFQRYLRSSRVFRGATVCSSLDILDEDYNGQ 143

  Fly   742 ---LLKNLDDWTFDVFALTEAASGQVVKYVAYELFNRYGSIHKFKIAPGILEAFLHRVEEGYCRY 803
               :|:.:.:|.||:|......:|..:..:.:.||:.:|.|..|.:....|..||..::|.| ..
Mouse   144 AKCMLEKVGNWNFDIFLFDRLTNGNSLVSLTFHLFSLHGLIEYFHLDMVKLRRFLVMIQEDY-HS 207

  Fly   804 RNPYHNNLHAVDVMQTIHYCLCNTGLMNWLTDLEIFASLLAALLHDYEHTGTTNNFHVMSGSETA 868
            :|||||.:||.||.|.:|..|....|.:.:|..:|..||:||..||.:|.|....|.:.:....|
Mouse   208 QNPYHNAVHAADVTQAMHCYLKEPKLASSVTPWDILLSLIAAATHDLDHPGVNQPFLIKTNHYLA 272

  Fly   869 LLYNDRAVLENHHASASFRLLREDEYNILSHLSREEFRELRGLVIEMVLGTDMTNHFQQMKAMRQ 933
            .||.:.:||||||..::..||||.  .:.|||..|..:|:...:..::|.||::...:.:...|.
Mouse   273 TLYKNSSVLENHHWRSAVGLLRES--GLFSHLPLESRQEMEAQIGALILATDISRQNEYLSLFRS 335

  Fly   934 LLTLQEATID----KQKVLSLVLHCCDISHPAKQWGVHHRWTMLLLEEFFRQGDLEKELGLPFSP 994
            .|...:..:|    :..||.:.|.|.||.:|.:.|.:..:|:..:.||||.|||:||:..|..||
Mouse   336 HLDKGDLHLDDGRHRHLVLQMALKCADICNPCRNWELSKQWSEKVTEEFFHQGDIEKKYHLGVSP 400

  Fly   995 LCDRNNTLVAESQICFIDFIVEP 1017
            ||||....:|..||.|:.::|||
Mouse   401 LCDRQTESIANIQIGFMTYLVEP 423

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pde1cNP_001137817.1 PDEase_I_N 666..722 CDD:285672 11/36 (31%)
PDEase_I 807..1026 CDD:278654 78/215 (36%)
Pde7aNP_001116231.1 Endonuc-BglII <51..128 CDD:286304 15/48 (31%)
PDEase_I 211..431 CDD:278654 78/215 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D904682at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

Return to query results.
Submit another query.