DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pde1c and pde1cb

DIOPT Version :9

Sequence 1:NP_001137817.1 Gene:Pde1c / 34594 FlyBaseID:FBgn0264815 Length:1173 Species:Drosophila melanogaster
Sequence 2:XP_017207862.1 Gene:pde1cb / 100536162 ZFINID:ZDB-GENE-090902-2 Length:698 Species:Danio rerio


Alignment Length:912 Identity:303/912 - (33%)
Similarity:425/912 - (46%) Gaps:282/912 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   313 GSASAGDSRSSN---------QGPSNSGPAASAAVKMQPSSPNATNYLADNIQISS-ANLSQTEM 367
            ||.::..:||.|         |...:..|....||:.:.:|..:   ||.....|| ||..||..
Zfish     2 GSVTSAFTRSRNTLVKVGSEPQKEPDGKPRTGTAVRAKHTSRQS---LAQKTTGSSRANTPQTAT 63

  Fly   368 VVGRD-------------SADYTAM-HSINVGVGNSFL-RGDTDIPQESGHSFETPSNMSFTAGQ 417
            |...|             |...:|: :::..|...... :...|:|.:.....|..:        
Zfish    64 VANEDGETNSRPLARFARSKSQSALWNTLTAGTSKKEKGKAQRDVPDDPQRIEEILA-------- 120

  Fly   418 WDTESLPPVDTPDALNKAAGRIRSLLRRMDHETVAYEDMQRNLHYAARVLEAVFIDESREGCNGN 482
               :.||..|||:|..|.|.|:|.|:::::....:..|:::||.|||.|||:|:|:|:|      
Zfish   121 ---DELPSTDTPEATEKTAVRLRCLVKQLERGEASLVDLKKNLEYAATVLESVYIEETR------ 176

  Fly   483 CKNLNCSRHSHGRDDQQQDNNNSNRSCSLQEASPGGAGAGVTPGADNQDSIESRTKGVSQAPQTH 547
                                                                             
Zfish   177 ----------------------------------------------------------------- 176

  Fly   548 SGPTGPPSNTSSETIAQPAPKLQPALETVRESVMEESPSKDPGDKGPPPPASTSTLTSQTTTSSS 612
                                                                             
Zfish   177 ----------------------------------------------------------------- 176

  Fly   613 ATAEPSAKAAESQAGSAGSSGSCSNPAAVHRQRRLRTPTWARSMSTNKTRLADEDDELSEVQPDA 677
                                                             ||.|.:||||::|.|:
Zfish   177 -------------------------------------------------RLVDTEDELSDIQSDS 192

  Fly   678 VPPEVREWLASTFTRQMATSRRKSDEKPKFRSVAHAIRAGIFVDRMYRRVSSSALTAFPPDVVRL 742
            ||.|||:||||||||||....|:::|||:|||:.||::|||||:|||||.|:....::||:|:.:
Zfish   193 VPSEVRDWLASTFTRQMGLMLRRTEEKPRFRSIVHAVQAGIFVERMYRRTSNMVGLSYPPNVIAV 257

  Fly   743 LKNLDDWTFDVFALTEAASGQVVKYVAYELFNRYGSIHKFKIAPGILEAFLHRVEEGYCRYRNPY 807
            |||:|.|:||||||.|::....:|::.|||..||..|.:|||....|.:|:..:|.||.:|:|||
Zfish   258 LKNVDRWSFDVFALNESSGDHALKFIFYELLTRYDLISRFKIPVSALVSFVEALEVGYSKYKNPY 322

  Fly   808 HNNLHAVDVMQTIHYCLCNTGLMNWLTDLEIFASLLAALLHDYEHTGTTNNFHVMSGSETALLYN 872
            ||.:||.||.||:||.|..||:::|:|:|||||.:.||.:|||||||||||||:.:.|:.|:|||
Zfish   323 HNLIHAADVTQTVHYLLLKTGMVHWMTELEIFAMIFAAAIHDYEHTGTTNNFHIQTRSDAAILYN 387

  Fly   873 DRAVLENHHASASFRLLR-EDEYNILSHLSREEFRELRGLVIEMVLGTDMTNHFQQMKAMRQLLT 936
            ||:|||:||.|||:|||: :||.|||.:||::::||.|.||:||||.|||:.||||:|||:..|.
Zfish   388 DRSVLESHHVSASYRLLQDDDEMNILYNLSKDDWREFRALVVEMVLATDMSCHFQQVKAMKNYLQ 452

  Fly   937 LQEATIDKQKVLSLVLHCCDISHPAKQWGVHHRWTMLLLEEFFRQGDLEKELGLPFSPLCDRNNT 1001
            ..|. |||.|.:||:||..|||||||.|.:|||||..||||||.|||.|.||||||||||||.:|
Zfish   453 QPEG-IDKPKAISLLLHAADISHPAKTWDLHHRWTTSLLEEFFLQGDKEAELGLPFSPLCDRKST 516

  Fly  1002 LVAESQICFIDFIVEPSMGVMSDMLELILAPIAPMNKSKPATLVEHETTA-----NSTTNSAIVI 1061
            :||:|||.||||||.|:..|::||.|.|:.|           |:|..|::     .|.|...:  
Zfish   517 MVAQSQIGFIDFIVVPTFTVLTDMTEKIVTP-----------LIEEATSSGLSGFRSITGGDV-- 568

  Fly  1062 PNSGITPSMDKPRDHRTEAKTTAAECLARKSVTGTTASKFNIPKPWLTCLVENKRIWKEQAVKDA 1126
                          .|:...::|::..:..:.:..|....|....|...:..|:..||.||.|:.
Zfish   569 --------------KRSSVNSSASDSSSSHNGSLLTVDLKNFKALWNEEVSLNRERWKMQAAKET 619

  Fly  1127 EARA---LATAAEEAAAAAAAEAEESKPETETAD---------------------GEQSEPAAEP 1167
            |.:|   |....|........|.|.|:|:.:..:                     ||.||.|..|
Zfish   620 EEKAKRELEEQQEVENQVQKKELELSEPKKDDPEPGVVNGPPEESPHGKSKKLQNGEVSEEAESP 684

  Fly  1168 AD 1169
            ||
Zfish   685 AD 686

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pde1cNP_001137817.1 PDEase_I_N 666..722 CDD:285672 35/55 (64%)
PDEase_I 807..1026 CDD:278654 140/219 (64%)
pde1cbXP_017207862.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 300 1.000 Domainoid score I1397
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 522 1.000 Inparanoid score I1218
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D439875at33208
OrthoFinder 1 1.000 - - FOG0001902
OrthoInspector 1 1.000 - - otm25613
orthoMCL 1 0.900 - - OOG6_100946
Panther 1 1.100 - - O PTHR11347
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X171
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
109.970

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