DRSC/TRiP Functional Genomics Resources

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Protein Alignment CycY and ltc2

DIOPT Version :10

Sequence 1:NP_609519.1 Gene:CycY / 34593 FlyBaseID:FBgn0032378 Length:406 Species:Drosophila melanogaster
Sequence 2:NP_593790.1 Gene:ltc2 / 2542216 PomBaseID:SPAC19A8.02 Length:1213 Species:Schizosaccharomyces pombe


Alignment Length:232 Identity:47/232 - (20%)
Similarity:80/232 - (34%) Gaps:105/232 - (45%)


- Green bases have known domain annotations that are detailed below.


  Fly   176 SQPNLKNTVKCVSLAIYYHIKNRQSDRRLDIFD--EKLHPLTHDQVPDNYDTHNPEHRQIYKFVR 238
            |.|:||..|.                   ::||  || ..|...|.|.|.|.:..:.:||.:...
pombe   245 SYPSLKRIVS-------------------NVFDRIEK-EILKRVQPPTNLDAYRFDPQQICQTNA 289

  Fly   239 TLFNAAQLTAECAIITLVYLERLLTYAELDVGPCNWKRMVLGAIL--LASKVWDDQAVWN----- 296
            |                                   ||.  |.:|  ::|...|::|:|.     
pombe   290 T-----------------------------------KRQ--GWLLRNISSSKADNKAIWRKYWFF 317

  Fly   297 VD--YCQILKDITVEDMN----ELERQFLELLQFNINVPSSVYAKYYFDLRTLAEANELNFPTEP 355
            ||  |...|    :.|.|    |.|:..:.|.:|:: :||: :.|:.|.::|             
pombe   318 VDNGYVGYL----INDANGGVFESEKIGVLLCKFSV-LPSN-HRKFCFQIKT------------- 363

  Fly   356 LSKERAQKLEAMSRVMQDKVTAEALKNGIKKWSSMDN 392
                     :::|.::|.:...|.|     :|.|:.|
pombe   364 ---------KSVSYILQAETHMEML-----EWGSVIN 386

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CycYNP_609519.1 CYCLIN_CCNY_like 228..324 CDD:410243 20/108 (19%)
ltc2NP_593790.1 BAR_SIP3_fungi 31..242 CDD:153293
PH_SIP3 291..394 CDD:270098 30/131 (23%)
VASt 779..927 CDD:464975
Blue background indicates that the domain is not in the aligned region.

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