DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment crol and ZNF439

DIOPT Version :9

Sequence 1:NP_001245993.1 Gene:crol / 34592 FlyBaseID:FBgn0020309 Length:962 Species:Drosophila melanogaster
Sequence 2:NP_001335647.1 Gene:ZNF439 / 90594 HGNCID:20873 Length:507 Species:Homo sapiens


Alignment Length:466 Identity:141/466 - (30%)
Similarity:210/466 - (45%) Gaps:35/466 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly   281 VCFNVFANNTSLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQ---YCAKTF 342
            |....|.|.||:.:..|..:.:..:            ::...:|||.|.|.....:   :|.:||
Human    55 VMLETFWNLTSIG
KKWKDQNIEYEY------------QNPRRNFRSVTEEKVNEIKEDSHCGETF 107

  Fly   343 TR-KEHMVNHVRKHTGETPHRCD--ICKKSFTRKEHYVNHYMWHTGQTPHQCDVCGKKYTRKEH- 403
            |. .:..:|..:|........||  :|:.........:| ....||....:|...|.|..:.:. 
Human   108 TPVPDDRLNFQKKKASPEVKSCDSFVCEVGLGNSSSNMN-IRGDTGHKACECQEYGPKPWKSQQP 171

  Fly   404 ---------LANHMRSHTNETPFRCEICGKSFSRKEHFTNHILWHTGETPHRCDFCSKTFTRKEH 459
                     |....|.||.:.|:.|:.|||:.........|::.|:|:.|::|.||.|.|.....
Human   172 KKAFRYHPSLRTQERDHTGKKPYACKECGKNIIYHSSIQRHMVVHSGDGPYKCKFCGKAFHCLSL 236

  Fly   460 LLNHVRQHTGESPHRCSYCMKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHVRQHT 524
            .|.|.|.||||.|:.|..|.|:|:.......|.|.|.||.|::|..|.|||........|.|.|.
Human   237 YLIHERTHTGEKPYECKQCGKSFSYSATHRIHERTHIGEKPYECQECGKAFHSPRSCHRHERSHM 301

  Fly   525 GESPHKCTYCTKTFTRKEHLTNHVRQHTGDSPHRCSYCKKTFTRKEHLTNHVRLHTGDSPHKCEY 589
            ||..::|..|.|.|....::..|.|.|:....:.|..|.|..:.......|:|:|:|:.|::|:.
Human   302 GEKAYQCKECGKAFMCPRYVRRHERTHSRKKLYECKQCGKALSSLTSFQTHIRMHSGERPYECKT 366

  Fly   590 CQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFTCETCGKSFPLK 654
            |.|.|...:....|.:.||.:.|:.|..|.|.|||......| .|.|||::|:.|:.|||:|...
Human   367 CGKGFYSAKSFQRHEKTHSGEKPYKCKQCGKAFTRSGSFRYH-ERTHTGEKPYECKQCGKAFRSA 430

  Fly   655 GNLLFHQRSHTKGQEMERPFACEKCPKNFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKR 719
            .||..|.|:||.    |:|:.|::|.|.|.....|..|.|.|:||||:.|..|.|||....|.:.
Human   431 PNLQLHGRTHTG----EKPYQCKECGKAFRSASQLRIHRRIHTGEKPYECKKCGKAFRYVQNFRF 491

  Fly   720 HMK-MNHPDAM 729
            |.: ..|.:|:
Human   492 HERTQTHKNAL 502

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
crolNP_001245993.1 C2H2 Zn finger 223..243 CDD:275368
C2H2 Zn finger 251..271 CDD:275368
C2H2 Zn finger 279..299 CDD:275368 6/17 (35%)
COG5048 300..723 CDD:227381 133/439 (30%)
C2H2 Zn finger 307..327 CDD:275368 2/19 (11%)
C2H2 Zn finger 335..355 CDD:275368 5/23 (22%)
C2H2 Zn finger 363..383 CDD:275368 4/21 (19%)
C2H2 Zn finger 391..411 CDD:275368 5/29 (17%)
C2H2 Zn finger 419..439 CDD:275368 5/19 (26%)
C2H2 Zn finger 447..467 CDD:275368 8/19 (42%)
C2H2 Zn finger 475..495 CDD:275368 6/19 (32%)
C2H2 Zn finger 503..523 CDD:275368 7/19 (37%)
C2H2 Zn finger 531..551 CDD:275368 6/19 (32%)
C2H2 Zn finger 559..579 CDD:275368 5/19 (26%)
C2H2 Zn finger 587..607 CDD:275368 5/19 (26%)
C2H2 Zn finger 615..636 CDD:275368 8/20 (40%)
C2H2 Zn finger 644..664 CDD:275368 9/19 (47%)
C2H2 Zn finger 676..696 CDD:275368 7/19 (37%)
C2H2 Zn finger 704..722 CDD:275368 7/17 (41%)
ZNF439NP_001335647.1 KRAB 26..67 CDD:307490 5/11 (45%)
C2H2 Zn finger 196..216 CDD:275368 5/19 (26%)
COG5048 <204..381 CDD:227381 56/176 (32%)
C2H2 Zn finger 224..244 CDD:275368 8/19 (42%)
C2H2 Zn finger 252..272 CDD:275368 6/19 (32%)
C2H2 Zn finger 280..300 CDD:275368 7/19 (37%)
C2H2 Zn finger 308..328 CDD:275368 6/19 (32%)
COG5048 <321..492 CDD:227381 62/175 (35%)
C2H2 Zn finger 336..356 CDD:275368 5/19 (26%)
C2H2 Zn finger 364..384 CDD:275368 5/19 (26%)
C2H2 Zn finger 392..412 CDD:275368 8/20 (40%)
C2H2 Zn finger 420..440 CDD:275368 9/19 (47%)
C2H2 Zn finger 448..468 CDD:275368 7/19 (37%)
C2H2 Zn finger 476..495 CDD:275368 7/18 (39%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100020
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.