DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment crol and ZSCAN9

DIOPT Version :9

Sequence 1:NP_001245993.1 Gene:crol / 34592 FlyBaseID:FBgn0020309 Length:962 Species:Drosophila melanogaster
Sequence 2:XP_011513177.1 Gene:ZSCAN9 / 7746 HGNCID:12984 Length:583 Species:Homo sapiens


Alignment Length:360 Identity:93/360 - (25%)
Similarity:154/360 - (42%) Gaps:63/360 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   233 RYQLIVHRRYHSERKPFMCQ----VCGQGFTTSQDLTRHGKIHIGGPMFTC---IVCFNVFANN- 289
            :::::.||    .|:..:|:    :..|...|.|...:.       |..||   ..|.::.... 
Human   270 QHEMVAHR----HRQEVLCKEMVPLAE
QTPLTLQSQPKE-------PQLTCDSAQKCHSIGETAP 323

  Fly   290 ---TSLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNH 351
               :.|.|.::|.:...|...           ||                :...||...:.:|..
Human   324 LWISDLIRSLRRRAVLIPLGA-----------HL----------------FSTDTFLFSKPVVIP 361

  Fly   352 VRKHTGET-PHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCDVCGKKYTRKEHLANHMRSHTNET 415
            ..|..||| |:...:.:...|:.|   :..:......|...:..||.:..:..      ..:.:.
Human   362 QLKGGGETWPNNRGVLRDEVTKTE---DRELVLRKDCPKIVEPHGKMFNEQTW------EVSQQD 417

  Fly   416 PFRCEICGKSFSRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSYCMK 480
            |...|: |:...|.|....::|   ||..|:||.|.|:||:...|:.|.|.||||.|:.|:.|.|
Human   418 PSHGEV-GEHKDRIERQWGNLL---GEGQHKCDECGKSFTQSSGLIRHQRIHTGERPYECNECGK 478

  Fly   481 TFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHVRQHTGESPHKCTYCTKTFTRKEHLT 545
            .|:|...|.||...|..:..:.|..|.|.|::...::.|.|.|.||.|::|:.|:|:::|:..|.
Human   479 AFSRSSGLFNHRGIHNIQKRYHCKECGKVFSQSAGLIQHQRIHKGEKPYQCSQCSKSYSRRSFLI 543

  Fly   546 NHVRQHTGDSPHRCSYCKKTFTRKEHLTNHVRLHT 580
            .|.|.|||:.||:|..|.|:|.|..:|..|.::||
Human   544 EHQRSHTGERPHQCIECGKSFNRHCNLIRHQKIHT 578

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
crolNP_001245993.1 C2H2 Zn finger 223..243 CDD:275368 2/9 (22%)
C2H2 Zn finger 251..271 CDD:275368 4/23 (17%)
C2H2 Zn finger 279..299 CDD:275368 4/26 (15%)
COG5048 300..723 CDD:227381 79/282 (28%)
C2H2 Zn finger 307..327 CDD:275368 2/19 (11%)
C2H2 Zn finger 335..355 CDD:275368 3/19 (16%)
C2H2 Zn finger 363..383 CDD:275368 2/19 (11%)
C2H2 Zn finger 391..411 CDD:275368 2/19 (11%)
C2H2 Zn finger 419..439 CDD:275368 5/19 (26%)
C2H2 Zn finger 447..467 CDD:275368 9/19 (47%)
C2H2 Zn finger 475..495 CDD:275368 8/19 (42%)
C2H2 Zn finger 503..523 CDD:275368 6/19 (32%)
C2H2 Zn finger 531..551 CDD:275368 7/19 (37%)
C2H2 Zn finger 559..579 CDD:275368 7/19 (37%)
C2H2 Zn finger 587..607 CDD:275368
C2H2 Zn finger 615..636 CDD:275368
C2H2 Zn finger 644..664 CDD:275368
C2H2 Zn finger 676..696 CDD:275368
C2H2 Zn finger 704..722 CDD:275368
ZSCAN9XP_011513177.1 SCAN 180..292 CDD:128708 4/25 (16%)
SCAN 181..268 CDD:280241
COG5048 <442..578 CDD:227381 53/135 (39%)
zf-C2H2 443..465 CDD:278523 10/21 (48%)
C2H2 Zn finger 445..465 CDD:275368 9/19 (47%)
zf-H2C2_2 458..482 CDD:290200 12/23 (52%)
C2H2 Zn finger 473..493 CDD:275368 8/19 (42%)
zf-C2H2 499..521 CDD:278523 6/21 (29%)
C2H2 Zn finger 501..521 CDD:275368 6/19 (32%)
zf-H2C2_2 514..538 CDD:290200 9/23 (39%)
C2H2 Zn finger 529..549 CDD:275368 7/19 (37%)
zf-H2C2_2 542..566 CDD:290200 12/23 (52%)
C2H2 Zn finger 557..577 CDD:275368 7/19 (37%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23226
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
11.100

Return to query results.
Submit another query.