DRSC/TRiP Functional Genomics Resources

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Protein Alignment crol and ZNF28

DIOPT Version :9

Sequence 1:NP_001245993.1 Gene:crol / 34592 FlyBaseID:FBgn0020309 Length:962 Species:Drosophila melanogaster
Sequence 2:NP_008900.3 Gene:ZNF28 / 7576 HGNCID:13073 Length:718 Species:Homo sapiens


Alignment Length:511 Identity:200/511 - (39%)
Similarity:281/511 - (54%) Gaps:39/511 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly   220 THV------CDICGKMFQFRYQLIVHRRYHSERKPFMCQVCGQGFTTSQDLTRHGKIHIGGPMFT 278
            ||:      ||:.||:|..:..|..|||.|.:.||:.|..||:                      
Human   236 THLEEKQCKCDVYGKVFNQKRYLACHRRSHIDEKPYKCNECGK---------------------- 278

  Fly   279 CIVCFNVFANNTSLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFT 343
                  :|.:||||..|...|:.|||:.|..|.|.|:||.||:.|...:||..|::|:.|.|.||
Human   279 ------IFGHNTSLFLHKALHTADKPYECEECDKVFSRKSHLETHKIIYTGGKPYKCKVCDKAFT 337

  Fly   344 RKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCDVCGKKYTRKEHLANHM 408
            ...::..|...||||.|::|:.|.|.|.|......|...|||:.|::|:.|.|.::||.||..|.
Human   338 CNSYLAKHTIIHTGEKPYKCNECGKVFNRLSTLARHRRLHTGEKPYECEECEKVFSRKSHLERHK 402

  Fly   409 RSHTNETPFRCEICGKSFSRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPH 473
            |.||.|.|::|::|.|:|:...:...|.:.||||.|::|:.|.|.|.::..|..|.|.||.|.|:
Human   403 RIHTGEKPYKCKVCDKAFAYNSYLAKHSIIHTGEKPYKCNECGKVFNQQSTLARHHRLHTAEKPY 467

  Fly   474 RCSYCMKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHVRQHTGESPHKCTYCTKTF 538
            :|..|.|.|..|.||..|.|.||||.|:||..|.|||.....:..|.|.||||.|:.|..|.|.|
Human   468 KCEECDKVFRCKSHLERHRRIHTGEKPYKCKVCDKAFRSDSCLTEHQRVHTGEKPYMCNECGKVF 532

  Fly   539 TRKEHLTNHVRQHTGDSPHRCSYCKKTFTRKEHLTNHVRLHTGDSPHKCEYCQKTFTRKEHLNNH 603
            :.|.:|..|.:.||.:.|::|..|:|.|:||.|:..|.|:|||:.|:||:.|.|.|.|..||..|
Human   533 STKANLACHHKLHTAEKPYKCEECEKVFSRKSHMERHRRIHTGEKPYKCKVCDKAFRRDSHLAQH 597

  Fly   604 MRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFTCETCGKSFPLKGNLLFHQRSHTKGQ 668
            .|.|:.:.|:.||.|.|.|.:...||.| .|.|||::|:.|..|||:|....:|::|.|.|:.  
Human   598 QRVHTGEKPYKCNECGKTFRQTSSLIIH-RRLHTGEKPYKCNECGKTFSQMSSLVYHHRLHSG-- 659

  Fly   669 EMERPFACEKCPKNFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMN 724
              |:|:.|.:|.|.|..:.||..|.|.|:||||:.|..|.|.|.:..||..|.:::
Human   660 --EKPYKCNECGKVFNQQAHLAQHQRVHTGEKPYKCNECGKTFSQMSNLVYHHRLH 713

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
crolNP_001245993.1 C2H2 Zn finger 223..243 CDD:275368 9/19 (47%)
C2H2 Zn finger 251..271 CDD:275368 3/19 (16%)
C2H2 Zn finger 279..299 CDD:275368 6/19 (32%)
COG5048 300..723 CDD:227381 176/422 (42%)
C2H2 Zn finger 307..327 CDD:275368 9/19 (47%)
C2H2 Zn finger 335..355 CDD:275368 6/19 (32%)
C2H2 Zn finger 363..383 CDD:275368 6/19 (32%)
C2H2 Zn finger 391..411 CDD:275368 9/19 (47%)
C2H2 Zn finger 419..439 CDD:275368 5/19 (26%)
C2H2 Zn finger 447..467 CDD:275368 7/19 (37%)
C2H2 Zn finger 475..495 CDD:275368 9/19 (47%)
C2H2 Zn finger 503..523 CDD:275368 7/19 (37%)
C2H2 Zn finger 531..551 CDD:275368 7/19 (37%)
C2H2 Zn finger 559..579 CDD:275368 9/19 (47%)
C2H2 Zn finger 587..607 CDD:275368 9/19 (47%)
C2H2 Zn finger 615..636 CDD:275368 9/20 (45%)
C2H2 Zn finger 644..664 CDD:275368 8/19 (42%)
C2H2 Zn finger 676..696 CDD:275368 8/19 (42%)
C2H2 Zn finger 704..722 CDD:275368 7/17 (41%)
ZNF28NP_008900.3 KRAB 8..>48 CDD:214630
KRAB 8..47 CDD:279668
COG5048 <143..373 CDD:227381 55/164 (34%)