DRSC/TRiP Functional Genomics Resources

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Protein Alignment crol and ZNF18

DIOPT Version :9

Sequence 1:NP_001245993.1 Gene:crol / 34592 FlyBaseID:FBgn0020309 Length:962 Species:Drosophila melanogaster
Sequence 2:NP_001290210.1 Gene:ZNF18 / 7566 HGNCID:12969 Length:549 Species:Homo sapiens


Alignment Length:238 Identity:77/238 - (32%)
Similarity:112/238 - (47%) Gaps:15/238 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly   384 TGQTPHQCDVCG-------KKYTRKEHLANHMRSHTNETPFRCEICGKSFSRKEHFTNHILWHTG 441
            :|:.|.|..:.|       ..:...|:|...:::..:|.      .|:..|.:|..:...|....
Human   316 SGEVPSQASLRGFFTEDEPGCFGEGENLPEALQNIQDEG------TGEQLSPQERISEKQLGQHL 374

  Fly   442 ETPHRCDFCSKTFTRKEHL--LNHVRQHTGESPHRCSYCMKTFTRKEHLVNHIRQHTGETPFKCT 504
            ..||..:..:.....|...  ....|....:....|..|.|||.|...|:.|.|.|||||.|:||
Human   375 PNPHSGEMSTMWLEEKRETSQKGQPRAPMAQKLPTCRECGKTFYRNSQLIFHQRTHTGETYFQCT 439

  Fly   505 YCTKAFTRKDHMVNHVRQHTGESPHKCTYCTKTFTRKEHLTNHVRQHTGDSPHRCSYCKKTFTRK 569
            .|.|||.|....|.|.|.||||.|.||.||.|.|:....|.:|.:.|||:.|::|..|:|:|.::
Human   440 ICKKAFLRSSDFVKHQRTHTGEKPCKCDYCGKGFSDFSGLRHHEKIHTGEKPYKCPICEKSFIQR 504

  Fly   570 EHLTNHVRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNP 612
            .:...|.|:|||:.|:||.:|.|:|:....|:.|.|.|....|
Human   505 SNFNRHQRVHTGEKPYKCSHCGKSFSWSSSLDKHQRSHLGKKP 547

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
crolNP_001245993.1 C2H2 Zn finger 223..243 CDD:275368
C2H2 Zn finger 251..271 CDD:275368
C2H2 Zn finger 279..299 CDD:275368
COG5048 300..723 CDD:227381 77/238 (32%)
C2H2 Zn finger 307..327 CDD:275368
C2H2 Zn finger 335..355 CDD:275368
C2H2 Zn finger 363..383 CDD:275368
C2H2 Zn finger 391..411 CDD:275368 3/26 (12%)
C2H2 Zn finger 419..439 CDD:275368 4/19 (21%)
C2H2 Zn finger 447..467 CDD:275368 2/21 (10%)
C2H2 Zn finger 475..495 CDD:275368 9/19 (47%)
C2H2 Zn finger 503..523 CDD:275368 10/19 (53%)
C2H2 Zn finger 531..551 CDD:275368 7/19 (37%)
C2H2 Zn finger 559..579 CDD:275368 6/19 (32%)
C2H2 Zn finger 587..607 CDD:275368 7/19 (37%)
C2H2 Zn finger 615..636 CDD:275368
C2H2 Zn finger 644..664 CDD:275368
C2H2 Zn finger 676..696 CDD:275368
C2H2 Zn finger 704..722 CDD:275368
ZNF18NP_001290210.1 SCAN 37..148 CDD:322011
KRAB <222..249 CDD:307490
C2H2 Zn finger 410..430 CDD:275368 9/19 (47%)
COG5048 <436..549 CDD:227381 48/112 (43%)
C2H2 Zn finger 438..458 CDD:275368 10/19 (53%)
C2H2 Zn finger 466..486 CDD:275368 7/19 (37%)
zf-H2C2_2 479..503 CDD:316026 10/23 (43%)
C2H2 Zn finger 494..514 CDD:275368 6/19 (32%)
zf-H2C2_2 506..530 CDD:316026 10/23 (43%)
C2H2 Zn finger 522..542 CDD:275368 7/19 (37%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23226
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
22.010

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