DRSC/TRiP Functional Genomics Resources

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Protein Alignment crol and Zkscan1

DIOPT Version :9

Sequence 1:NP_001245993.1 Gene:crol / 34592 FlyBaseID:FBgn0020309 Length:962 Species:Drosophila melanogaster
Sequence 2:NP_598667.2 Gene:Zkscan1 / 74570 MGIID:1921820 Length:561 Species:Mus musculus


Alignment Length:197 Identity:83/197 - (42%)
Similarity:108/197 - (54%) Gaps:17/197 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly   423 GKSFSRKEHFTNHILWHTGETP---------HRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSYC 478
            |:|||...:|.|        ||         ||||.|.|.|||...|:.|...||||.|:.|:.|
Mouse   352 GRSFSLSANFNN--------TPEEAPSGAKTHRCDECGKCFTRSSSLIRHKIIHTGEKPYECNEC 408

  Fly   479 MKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHVRQHTGESPHKCTYCTKTFTRKEH 543
            .|.|:...:||.|.|.||||.|.:|..|.|||:...:::.|.|.|:||.|::|..|.|.|::...
Mouse   409 GKAFSLNSNLVLHQRIHTGEKPHECNECGKAFSHSSNLILHQRIHSGEKPYECNECGKAFSQSSD 473

  Fly   544 LTNHVRQHTGDSPHRCSYCKKTFTRKEHLTNHVRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHS 608
            ||.|.|.|||:.|:.||.|.|.|.|..:|..|.|:||.:.|:||..|.|.|||...|..|.|.|:
Mouse   474 LTKHQRIHTGEKPYECSECGKAFNRNSYLILHRRIHTREKPYKCTKCGKAFTRSSTLTLHHRIHA 538

  Fly   609 SD 610
            .:
Mouse   539 RE 540

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
crolNP_001245993.1 C2H2 Zn finger 223..243 CDD:275368
C2H2 Zn finger 251..271 CDD:275368
C2H2 Zn finger 279..299 CDD:275368
COG5048 300..723 CDD:227381 83/197 (42%)
C2H2 Zn finger 307..327 CDD:275368
C2H2 Zn finger 335..355 CDD:275368
C2H2 Zn finger 363..383 CDD:275368
C2H2 Zn finger 391..411 CDD:275368
C2H2 Zn finger 419..439 CDD:275368 6/15 (40%)
C2H2 Zn finger 447..467 CDD:275368 9/19 (47%)
C2H2 Zn finger 475..495 CDD:275368 8/19 (42%)
C2H2 Zn finger 503..523 CDD:275368 7/19 (37%)
C2H2 Zn finger 531..551 CDD:275368 8/19 (42%)
C2H2 Zn finger 559..579 CDD:275368 9/19 (47%)
C2H2 Zn finger 587..607 CDD:275368 9/19 (47%)
C2H2 Zn finger 615..636 CDD:275368
C2H2 Zn finger 644..664 CDD:275368
C2H2 Zn finger 676..696 CDD:275368
C2H2 Zn finger 704..722 CDD:275368
Zkscan1NP_598667.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..51
SCAN 52..162 CDD:128708
SCAN 52..129 CDD:280241
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 163..187
KRAB 225..263 CDD:279668
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 260..372 8/27 (30%)
COG5048 <354..535 CDD:227381 80/188 (43%)
zf-C2H2 375..397 CDD:278523 11/21 (52%)
C2H2 Zn finger 377..397 CDD:275368 9/19 (47%)
zf-H2C2_2 389..413 CDD:290200 10/23 (43%)
C2H2 Zn finger 405..425 CDD:275368 8/19 (42%)
zf-H2C2_2 417..442 CDD:290200 14/24 (58%)
C2H2 Zn finger 433..453 CDD:275368 7/19 (37%)
zf-H2C2_2 445..470 CDD:290200 10/24 (42%)
C2H2 Zn finger 461..481 CDD:275368 8/19 (42%)
zf-H2C2_2 473..498 CDD:290200 13/24 (54%)
C2H2 Zn finger 489..509 CDD:275368 9/19 (47%)
zf-H2C2_2 501..526 CDD:290200 11/24 (46%)
C2H2 Zn finger 517..537 CDD:275368 9/19 (47%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23226
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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