DRSC/TRiP Functional Genomics Resources

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Protein Alignment crol and Prdm5

DIOPT Version :9

Sequence 1:NP_001245993.1 Gene:crol / 34592 FlyBaseID:FBgn0020309 Length:962 Species:Drosophila melanogaster
Sequence 2:XP_006506667.1 Gene:Prdm5 / 70779 MGIID:1918029 Length:630 Species:Mus musculus


Alignment Length:428 Identity:139/428 - (32%)
Similarity:204/428 - (47%) Gaps:17/428 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly   223 CDICGKMFQFRYQLIVHRRYHSERKPF-------MCQVCGQGFTTSQDLTRHGKIHIGGPMFTCI 280
            |:.|||.|..|..|..|..:.:.|...       .|.:|...|:::....:|.|...|...|.|.
Mouse   201 CENCGKKFPVRQALQRHALFCTARSSLKNSSSSVQCALCNSLFSSALSFEQHRKACRGEARFVCK 265

  Fly   281 V--CFNVFANNTSLERHMKRHSTDKP---FACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAK 340
            .  |.....:..:|.||.:...|..|   ..|::|.:.......|..|.:.|   ..|.||.|.|
Mouse   266 ADSCGKRLKSKDALRRHQENVHTGDPKRKLICSVCNRKCTSVSSLQEHRKIH---EIFDCQECMK 327

  Fly   341 TFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCDVCGKKYTRKEHLA 405
            .|.....:..|:..|:.:.|:.|:||.|||.|.:....|.:.|:...|:||.:|||.:..:....
Mouse   328 KFISANQLKRHMITHSEKRPYNCEICNKSFKRLDQVGAHKVIHSEDKPYQCKLCGKGFAHRNVYK 392

  Fly   406 NHMRSHTNETPFRCEICGKSFSRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVR-QHTG 469
            ||.::|:.|.||:|:.|...|........|:|.|..|...:|..|..||.||:.|..||: .|..
Mouse   393 NHKKTHSEERPFQCDACKALFRTPFSLQRHLLIHNSERTFKCHHCDATFKRKDTLNVHVQVVHER 457

  Fly   470 ESPHRCSYCMKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHVRQHTGESPHKCTYC 534
            ...:||..|.|.|.....|.:|.:.||||....|.||.:.|.....:..|:|.||||.|::|.||
Mouse   458 HKKYRCELCNKAFVTPSVLRSHKKTHTGEKEKVCPYCGQKFASSGTLRVHIRSHTGERPYQCPYC 522

  Fly   535 TKTFTRKEHLTNHVRQHTGDSPHRCSYCKKTFTRKEHLTNHVRLHTGDSPHKCEYCQKTFTRKEH 599
            .|.|::.:.|..|:|.||.:.|::||.|.|.|::|..|..|.|.|||:.|.:|:.|...|:.|:.
Mouse   523 EKGFSKNDGLKMHIRTHTREKPYQCSECSKAFSQKRGLDEHKRTHTGEKPFQCDVCDLAFSLKKM 587

  Fly   600 LNNHMRQHSSDNPHC-CNVCNKPFTRKEHLINHMSRCH 636
            |..|...|:.:.|.. |:.|:|.|||.::|..||...|
Mouse   588 LIRHKMTHNPNRPMAECHFCHKKFTRNDYLKVHMDNIH 625

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
crolNP_001245993.1 C2H2 Zn finger 223..243 CDD:275368 8/19 (42%)
C2H2 Zn finger 251..271 CDD:275368 5/19 (26%)
C2H2 Zn finger 279..299 CDD:275368 5/21 (24%)
COG5048 300..723 CDD:227381 118/342 (35%)
C2H2 Zn finger 307..327 CDD:275368 4/19 (21%)
C2H2 Zn finger 335..355 CDD:275368 6/19 (32%)
C2H2 Zn finger 363..383 CDD:275368 8/19 (42%)
C2H2 Zn finger 391..411 CDD:275368 6/19 (32%)
C2H2 Zn finger 419..439 CDD:275368 5/19 (26%)
C2H2 Zn finger 447..467 CDD:275368 9/20 (45%)
C2H2 Zn finger 475..495 CDD:275368 6/19 (32%)
C2H2 Zn finger 503..523 CDD:275368 6/19 (32%)
C2H2 Zn finger 531..551 CDD:275368 8/19 (42%)
C2H2 Zn finger 559..579 CDD:275368 9/19 (47%)
C2H2 Zn finger 587..607 CDD:275368 6/19 (32%)
C2H2 Zn finger 615..636 CDD:275368 9/20 (45%)
C2H2 Zn finger 644..664 CDD:275368
C2H2 Zn finger 676..696 CDD:275368
C2H2 Zn finger 704..722 CDD:275368
Prdm5XP_006506667.1 PR-SET_PRDM5 2..128 CDD:380967
C2H2 Zn finger 169..190 CDD:275368
zf-C2H2_8 <172..222 CDD:374215 8/20 (40%)
C2H2 Zn finger 201..217 CDD:275368 7/15 (47%)
C2H2 Zn finger 236..256 CDD:275368 5/19 (26%)
COG5048 258..621 CDD:227381 122/365 (33%)
C2H2 Zn finger 264..287 CDD:275368 5/22 (23%)
C2H2 Zn finger 297..317 CDD:275368 4/19 (21%)
C2H2 Zn finger 322..342 CDD:275368 6/19 (32%)
C2H2 Zn finger 350..370 CDD:275368 8/19 (42%)
C2H2 Zn finger 378..398 CDD:275368 6/19 (32%)
C2H2 Zn finger 406..426 CDD:275368 5/19 (26%)
C2H2 Zn finger 434..455 CDD:275368 9/20 (45%)
C2H2 Zn finger 463..483 CDD:275368 6/19 (32%)
C2H2 Zn finger 491..511 CDD:275368 6/19 (32%)
C2H2 Zn finger 519..539 CDD:275368 8/19 (42%)
C2H2 Zn finger 547..567 CDD:275368 9/19 (47%)
C2H2 Zn finger 575..595 CDD:275368 6/19 (32%)
C2H2 Zn finger 604..625 CDD:275368 9/20 (45%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23226
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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