DRSC/TRiP Functional Genomics Resources

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Protein Alignment crol and Zfp442

DIOPT Version :9

Sequence 1:NP_001245993.1 Gene:crol / 34592 FlyBaseID:FBgn0020309 Length:962 Species:Drosophila melanogaster
Sequence 2:XP_011238043.1 Gene:Zfp442 / 668923 MGIID:3651999 Length:673 Species:Mus musculus


Alignment Length:552 Identity:192/552 - (34%)
Similarity:274/552 - (49%) Gaps:58/552 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   226 CGKMFQFR---------------YQLI-------------VHRRYHSERKPFMCQVCGQGFTTSQ 262
            |||:|.::               |::|             :|:|.|...|.:....||:.|....
Mouse    86 CGKVFAYQSHPQGHQQIH
TGEKPYEVIQYLEAFAYHSSLQIHKRTHGGDKHYKINECGKAFACHN 150

  Fly   263 DLTRHGKIHIGGPMFTCIVCFNVFANNTSLERH------------------------MKRHSTDK 303
            .|.|:.::|.|..::.|..|...||.::.|::|                        .:.|:.:|
Mouse   151 SLQRYKRVH
TGEKLYECNQCGTDFAQHSHLQQHERMHTVKCKQSGKDFACYTNLQIYQRTHTGEK 215

  Fly   304 PFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKK 368
            |:.|..|.|||....||:.|.|.||||.|:.|..|.|.|::...:..|.|.||||.|:.|..|.|
Mouse   216 PYECIFCDKTFIHHSHLERHERIHTGEKPYECNQCGKAFSQNSSLQLHKRTHTGEKPYECKQCGK 280

  Fly   369 SFTRKEHYVNHYMWHTGQTPHQCDVCGKKYTRKEHLANHMRSHTNETPFRCEICGKSFSRKEHFT 433
            ||..:.....|...|.|:..::|..|||.:..:..|..|.|:||.|..:.|..|.|:|:.:.|..
Mouse   281 SFACQSGLQQHKKTHHGEKSYECKRCGKAFACQSDLQQHKRTHTGEKSYECNQCDKAFALRCHLR 345

  Fly   434 NHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSYCMKTFTRKEHLVNHIRQHTGE 498
            .|...||.|.|::|:.|.|.|.:..|.:.|.|.||||.|:.|:.|.|.|..:..|:.|.|.|:||
Mouse   346 RHQRIHTVEKPYKCNQCGKFFAQSNHFVRHKRTHTGEKPYECNQCDKAFACQTSLLYHKRTHSGE 410

  Fly   499 TPFKCTYCTKAFTRKDHMVNHVRQHTGESPHKCTYCTKTFTRKEHLTNHVRQHTGDSPHRCSYCK 563
            ..:.|..|.|||..:.::..|.|.||||.|..|..|.|.|.:..||..|.|.|||:.|:.|..|.
Mouse   411 KLYVCNECGKAFVLQSYLQIHKRTHTGEKPFGCDQCDKAFAQNSHLLTHKRTHTGEKPYECEQCG 475

  Fly   564 KTFTRKEHLTNHVRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHL 628
            |.|....:|..|.:.|||:.|::|:.|.|.|..:..|..|.|.|:.:.|:.||.|:|.|..:..|
Mouse   476 KAFASNSNLQVHKKTHTGEKPYECKQCGKAFGFQSGLQKHKRTHTGEKPYECNQCDKAFACQASL 540

  Fly   629 INHMSRCHTGDRPFTCETCGKSFPLKGNLLFHQRSHTKGQEMERPFACEKCPKNFICKGHLVSHM 693
            :|| .|.|||::|:.|..|||:|.|...|..|:|.||.    |:||.|::|.|.|.....|:.|.
Mouse   541 LNH-KRSHTGEKPYECSECGKAFVLHSYLQIHKRIHTG----EKPFECDQCDKAFARNTLLLKHK 600

  Fly   694 RSHSGEKPHACTLCSKAFVERGNLKRHMKMNH 725
            |.|:|:||:.|..|.|||....||:.| |..|
Mouse   601 RIHTGQKPYGCKQCGKAFANHSNLQVH-KRTH 631

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
crolNP_001245993.1 C2H2 Zn finger 223..243 CDD:275368 8/44 (18%)
C2H2 Zn finger 251..271 CDD:275368 5/19 (26%)
C2H2 Zn finger 279..299 CDD:275368 6/43 (14%)
COG5048 300..723 CDD:227381 166/422 (39%)
C2H2 Zn finger 307..327 CDD:275368 9/19 (47%)
C2H2 Zn finger 335..355 CDD:275368 6/19 (32%)
C2H2 Zn finger 363..383 CDD:275368 6/19 (32%)
C2H2 Zn finger 391..411 CDD:275368 7/19 (37%)
C2H2 Zn finger 419..439 CDD:275368 6/19 (32%)
C2H2 Zn finger 447..467 CDD:275368 7/19 (37%)
C2H2 Zn finger 475..495 CDD:275368 7/19 (37%)
C2H2 Zn finger 503..523 CDD:275368 7/19 (37%)
C2H2 Zn finger 531..551 CDD:275368 8/19 (42%)
C2H2 Zn finger 559..579 CDD:275368 6/19 (32%)
C2H2 Zn finger 587..607 CDD:275368 7/19 (37%)
C2H2 Zn finger 615..636 CDD:275368 9/20 (45%)
C2H2 Zn finger 644..664 CDD:275368 9/19 (47%)
C2H2 Zn finger 676..696 CDD:275368 7/19 (37%)
C2H2 Zn finger 704..722 CDD:275368 8/17 (47%)
Zfp442XP_011238043.1 KRAB 10..50 CDD:366587
C2H2 Zn finger 83..103 CDD:275368 4/16 (25%)
C2H2 Zn finger 140..159 CDD:275368 5/18 (28%)
C2H2 Zn finger 167..183 CDD:275368 5/15 (33%)
C2H2 Zn finger 191..211 CDD:275368 0/19 (0%)
COG5048 215..595 CDD:227381 151/384 (39%)
C2H2 Zn finger 219..239 CDD:275368 9/19 (47%)
C2H2 Zn finger 247..267 CDD:275368 6/19 (32%)
C2H2 Zn finger 275..295 CDD:275368 6/19 (32%)
C2H2 Zn finger 303..323 CDD:275368 7/19 (37%)
C2H2 Zn finger 331..351 CDD:275368 6/19 (32%)
C2H2 Zn finger 359..379 CDD:275368 7/19 (37%)
C2H2 Zn finger 387..407 CDD:275368 7/19 (37%)
C2H2 Zn finger 415..435 CDD:275368 7/19 (37%)
C2H2 Zn finger 443..463 CDD:275368 8/19 (42%)
C2H2 Zn finger 471..491 CDD:275368 6/19 (32%)
C2H2 Zn finger 499..519 CDD:275368 7/19 (37%)
C2H2 Zn finger 527..547 CDD:275368 9/20 (45%)
C2H2 Zn finger 555..575 CDD:275368 9/19 (47%)
SFP1 <577..660 CDD:227516 24/60 (40%)
C2H2 Zn finger 583..603 CDD:275368 7/19 (37%)
C2H2 Zn finger 611..631 CDD:275368 9/20 (45%)
C2H2 Zn finger 639..658 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 505 1.000 Inparanoid score I1328
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100020
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.950

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