DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment crol and RBAK

DIOPT Version :9

Sequence 1:NP_001245993.1 Gene:crol / 34592 FlyBaseID:FBgn0020309 Length:962 Species:Drosophila melanogaster
Sequence 2:NP_001191385.1 Gene:RBAK / 57786 HGNCID:17680 Length:714 Species:Homo sapiens


Alignment Length:589 Identity:193/589 - (32%)
Similarity:280/589 - (47%) Gaps:96/589 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   204 GQNV-----ALAPDGTPIATGTHVCDICGKMFQFRYQLIVHRRYHSER----------------- 246
            |:|:     .::.||:...|....|:.|||            .||.|:                 
Human   141 GKNLESISQLISSDGSYARTKPDECNECGK------------TYHGEKMCEFNQNGDTYSHNEEN 193

  Fly   247 ---------KPFMCQVCGQGFTTSQDLTRHGKIHIG---------GPMFTCIVCFNVFANNTSLE 293
                     |||....|.:..........|.:.:||         ||.|..:..||.: ..:.:|
Human   194 ILQKISILEKPFEYNECMEALDNEAVFIAHKRAYIGEKPYEWNDSGPDFIQMSNFNAY-QRSQME 257

  Fly   294 RHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGE 358
            .        |||.|:.|.|:|.:|.....|.|:||||.|:.|..|.|:|::|..:..|.|.|..|
Human   258 M--------KPFECSECGKSFCKKSKFIIHQRAHTGEKPYECNVCGKSFSQKGTLTVHRRSHLEE 314

  Fly   359 TPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCDVCGKKYTRKEHLANHMRSHTNETPFRCEICG 423
            .|::|:.|.|:|.:|.|...|...|:|:.|::|..|||.:.:|.||..|.|:|:.|.|:.|..||
Human   315 KPYKCNECGKTFCQKLHLTQHLRTHSGEKPYECSECGKTFCQKTHLTLHQRNHSGERPYPCNECG 379

  Fly   424 KSFSRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSYCMKTFTRKEHL 488
            ||||||...::|...||||..::|:.|.|::.||..|:.|.|.||||.|::||.|.|.|:|..:|
Human   380 KSFSRKSALSDHQRTHTGEKLYKCNECGKSYYRKSTLITHQRTHTGEKPYQCSECGKFFSRVSYL 444

  Fly   489 VNHIRQHTGETPFKCTYCTKAFTRKDHMVNHVRQHTGESPHKCTYCTKTFTRKEHLTNHVRQHTG 553
            ..|.|.|..|.|::|..|.|.|......:.|.:.||.|..|:|:.|.| |::. :||:|...|..
Human   445 TIHYRSHLEEKPYECNECGKTFNLNSAFIRHRKVHTEEKSHECSECGK-FSQL-YLTDHHTAHLE 507

  Fly   554 DSPHRCSYCKKT----------------------------FTRKEHLTNHVRLHTGDSPHKCEYC 590
            :.|:.|:.|.||                            |....:.|.|.|.|:.:.|:.|..|
Human   508 EKPYECNECGKTFLVNSAFDGHQPLPKGEKSYECNVCGKLFNELSYYTEHYRSHSEEKPYGCSEC 572

  Fly   591 QKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFTCETCGKSFPLKG 655
            .|||:....|..|.|.|:.:.|:.|..|.|.|::|.:|..| .|.|:|::|:.|..|||.|....
Human   573 GKTFSHNSSLFRHQRVHTGEKPYECYECGKFFSQKSYLTIH-HRIHSGEKPYECSKCGKVFSRMS 636

  Fly   656 NLLFHQRSHTKGQEMERPFACEKCPKNFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRH 720
            ||..|.|||:.    |:|:.|.:|.|.|..|.:|..|.|:||||||:.|..|.|.|..|.....|
Human   637 NLTVHYRSHSG----EKPYECNECGKVFSQKSYLTVHYRTHSGEKPYECNECGKKFHHRSAFNSH 697

  Fly   721 MKMN 724
            .:::
Human   698 QRIH 701

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
crolNP_001245993.1 C2H2 Zn finger 223..243 CDD:275368 4/19 (21%)
C2H2 Zn finger 251..271 CDD:275368 2/19 (11%)
C2H2 Zn finger 279..299 CDD:275368 3/19 (16%)
COG5048 300..723 CDD:227381 168/450 (37%)
C2H2 Zn finger 307..327 CDD:275368 7/19 (37%)
C2H2 Zn finger 335..355 CDD:275368 7/19 (37%)
C2H2 Zn finger 363..383 CDD:275368 7/19 (37%)
C2H2 Zn finger 391..411 CDD:275368 9/19 (47%)
C2H2 Zn finger 419..439 CDD:275368 10/19 (53%)
C2H2 Zn finger 447..467 CDD:275368 8/19 (42%)
C2H2 Zn finger 475..495 CDD:275368 9/19 (47%)
C2H2 Zn finger 503..523 CDD:275368 5/19 (26%)
C2H2 Zn finger 531..551 CDD:275368 7/19 (37%)
C2H2 Zn finger 559..579 CDD:275368 8/47 (17%)
C2H2 Zn finger 587..607 CDD:275368 8/19 (42%)
C2H2 Zn finger 615..636 CDD:275368 8/20 (40%)
C2H2 Zn finger 644..664 CDD:275368 9/19 (47%)
C2H2 Zn finger 676..696 CDD:275368 8/19 (42%)
C2H2 Zn finger 704..722 CDD:275368 6/17 (35%)
RBAKNP_001191385.1 KRAB 8..68 CDD:214630
C2H2 Zn finger 165..199 CDD:275368 7/45 (16%)
Required for interaction with RB1. /evidence=ECO:0000269|PubMed:10702291 171..260 16/97 (16%)
C2H2 Zn finger 207..227 CDD:275368 2/19 (11%)
C2H2 Zn finger 263..283 CDD:275368 7/19 (37%)
C2H2 Zn finger 291..311 CDD:275368 7/19 (37%)
C2H2 Zn finger 319..339 CDD:275368 7/19 (37%)
COG5048 343..701 CDD:227381 134/364 (37%)
C2H2 Zn finger 347..367 CDD:275368 9/19 (47%)
C2H2 Zn finger 375..395 CDD:275368 10/19 (53%)
C2H2 Zn finger 403..423 CDD:275368 8/19 (42%)
Interaction with AR. /evidence=ECO:0000269|PubMed:14664718 417..714 101/292 (35%)
C2H2 Zn finger 431..451 CDD:275368 9/19 (47%)
C2H2 Zn finger 459..479 CDD:275368 5/19 (26%)
C2H2 Zn finger 513..533 CDD:275368 4/19 (21%)
C2H2 Zn finger 541..561 CDD:275368 4/19 (21%)
C2H2 Zn finger 569..589 CDD:275368 8/19 (42%)
C2H2 Zn finger 597..617 CDD:275368 8/20 (40%)
C2H2 Zn finger 625..645 CDD:275368 9/19 (47%)
C2H2 Zn finger 653..673 CDD:275368 8/19 (42%)
C2H2 Zn finger 681..701 CDD:275368 6/19 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 499 1.000 Inparanoid score I1378
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100020
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
43.860

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