DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment crol and rn

DIOPT Version :10

Sequence 1:NP_477243.1 Gene:crol / 34592 FlyBaseID:FBgn0020309 Length:962 Species:Drosophila melanogaster
Sequence 2:NP_001262343.1 Gene:rn / 40879 FlyBaseID:FBgn0267337 Length:952 Species:Drosophila melanogaster


Alignment Length:1086 Identity:249/1086 - (22%)
Similarity:339/1086 - (31%) Gaps:360/1086 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 PPLPKSEHKEDGKPPHGIEMYKVNIEDISQLFT-YHEVFGKIHGDVVNHQLAAAHGGQLPPPPPL 94
            |.|....|.......||...|.......|.:.| ||:  |.:.|........|      ||.|..
  Fly    11 PQLAHHPHSNPHNSSHGHSDYHQFRSYPSFVVTPYHD--GHVQGPATPTPCTA------PPTPCN 67

  Fly    95 PPQVTSHAASAAAAAAAASTNNAAVAAVMASANAAAAAAAAASAGGGLPPATSGNGGQQVTVTTT 159
            .|...|...|..........:...|.:..|.|.||||||||.:.||.  .||.......:.:...
  Fly    68 GPVPVSVPVSIPVCHTGGQGSPVIVESSFAIAAAAAAAAAAVAVGGS--SATPLLPSPPIKIEQV 130

  Fly   160 SSSTSSGGSTTS----GGTTTTAGELLMPKMEGGIHGVDGSGN-----GGNGGGQNVALAPDGTP 215
            ....||.|:...    |...........|....|.....|:.|     ..||...|....|...|
  Fly   131 FGEPSSLGAVVEDYALGLDCPVEHTFRKPHNNNGYSWSTGNNNEVVSHSSNGHTNNHPTTPPTPP 195

  Fly   216 -IATGTHVCDICGKMFQFRYQLIVHRRYHSERKPFMCQVCGQGFTTSQDLTRHGKIHIGGP---- 275
             .|:.|....:.....                        .|....||..:..|. .|..|    
  Fly   196 NEASATQATSVSAINL------------------------NQAQPASQTRSNFGS-SIKSPPSEP 235

  Fly   276 -MFTCIVCFNVFANN------TSLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPF 333
             ..|...|.:...|:      .||..|...|:.:............|.....:.......|:.|.
  Fly   236 DAVTAATCKSQENNSGQNPTPNSLSDHNPAHNLNSNSTAAAVAAAAAAAAAANMPIGGVQGQNPT 300

  Fly   334 RCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCDVCGKKY 398
            :......:....|||       ||:|.|.......          ||||: |...|..|:.....
  Fly   301 QGLVHWMSAVMAEHM-------TGQTHHDPGAVGM----------HYMWN-GNVDHAKDISDYNL 347

  Fly   399 ---TRKEHLANHMRSHTNETPFRCEICGKSFSRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHL 460
               |.:.|  .|...| :....:.|...|   ..:|..|::                   :|.|.
  Fly   348 WPPTPRSH--QHASEH-HPMSLKQEYEAK---MNDHHHNNL-------------------QKGHF 387

  Fly   461 L--NHVRQH--TGE-----------------------------------SPHRCSYCMKTFTRKE 486
            |  |.:..|  ||:                                   :.|..:..:...:...
  Fly   388 LDDNRLEHHAVTGQGGLGLGASNGVGGGGGGASVVGNSSLGASSHHAVAAAHHHNQAVAAASAAA 452

  Fly   487 HLV---------------------NHIRQHTGETPFKCTYCTKAFTRKDHMVNHVRQHTGES-PH 529
            .||                     .|.........::|..|.:.|:.|..:..|.:.|..|: |:
  Fly   453 LLVVPQPINASKMGGPGGVSSVAGGHATGGGSGRKYQCKMCPQIFSSKADLQLHTQIHMREAKPY 517

  Fly   530 KCTYCTKTFTRKEHLTNHVRQHTGDSPHRCSYCKKTFTRKEHLTNHVRLHTGDSPHKCEY--CQK 592
            |||.|:|.|....:|:.|.|.|.|..|:||..|::.||:..||..|:|.||||.|:||.:  |||
  Fly   518 KCTQCSKAFANSSYLSQHTRIHLGIKPYRCEICQRKFTQLSHLQQHIRTHTGDKPYKCRHPGCQK 582

  Fly   593 TFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFTCETCGKSFPLKGNL 657
            .|::..:|.:|                             ||||..|:||.|.:|.|.|..:.:|
  Fly   583 AFSQLSNLQSH-----------------------------SRCHQTDKPFKCNSCYKCFSDEPSL 618

  Fly   658 LFHQRSHTKGQEMERPFACEKCPKNFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMK 722
            |.|...|.:.:                   ||          |.|.|..|.|::.:...|.:||:
  Fly   619 LEHIPKHKESK-------------------HL----------KTHICQYCGKSYTQETYLTKHMQ 654

  Fly   723 MNHPDAMMPPPPVHPHPQIPAGVLTQVKQEVKPIIIPHHSATTTMHTIQQITAGAAGGAGAVQLT 787
             .|.:                      :.:.:|.|:|..:|     .|....|.||||:......
  Fly   655 -KHAE----------------------RTDKRPPIVPGSAA-----AIAAAAAAAAGGSANPANG 691

  Fly   788 PGLVPLVTSTLISHNAAAQQQSQKQQAAAAAA---------AQQQAAAAAAAQQQAAQQQAAAAH 843
            |...|         |.|..|::.......:.|         ....:||||.|.:        ..|
  Fly   692 PPPPP---------NPAQHQRNNLGLPPVSIAPSDNGYWPKVSPDSAAAANAME--------VMH 739

  Fly   844 QQHQQQVAAQHQQQAAVAAHQQQQQQLQQQQQLLQLSIQQAAHHHQQ-----EQHRQQQQQQHQQ 903
            ||.|||     |||      ||||||.|||||      |||.|||.|     :||...||||.||
  Fly   740 QQQQQQ-----QQQ------QQQQQQQQQQQQ------QQAHHHHPQHGVPPQQHVPPQQQQQQQ 787

  Fly   904 QQQQQHHQQQQQGHPQAPPPQQQQQ---------------------------PPPIA--LISDPS 939
            ||||.||.|||      ||||...:                           |.|:.  :.|.||
  Fly   788 QQQQHHHPQQQ------PPPQHSMEAHYAQPTAPNGSQSNGHGAELQPHHRMPDPVREDIASTPS 846

  Fly   940 ALA---RAAI--------------------QLQHLPANVEQHPVVY 962
            |:.   .|:|                    .|.|.|  :.|.|.:|
  Fly   847 AVGPYDAASITKTTSNSAFTPINSMPPHLNSLSHHP--MAQRPYLY 890

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
crolNP_477243.1 C2H2 Zn finger 223..243 CDD:275368 0/19 (0%)
C2H2 Zn finger 251..271 CDD:275368 4/19 (21%)
C2H2 Zn finger 279..299 CDD:275368 5/25 (20%)
COG5048 300..723 CDD:227381 103/488 (21%)
C2H2 Zn finger 307..327 CDD:275368 1/19 (5%)
C2H2 Zn finger 335..355 CDD:275368 3/19 (16%)
C2H2 Zn finger 363..383 CDD:275368 3/19 (16%)
C2H2 Zn finger 391..411 CDD:275368 4/22 (18%)
C2H2 Zn finger 419..439 CDD:275368 4/19 (21%)
C2H2 Zn finger 447..467 CDD:275368 4/21 (19%)
C2H2 Zn finger 475..495 CDD:275368 3/40 (8%)
C2H2 Zn finger 503..523 CDD:275368 5/19 (26%)
C2H2 Zn finger 531..551 CDD:275368 8/19 (42%)
C2H2 Zn finger 559..579 CDD:275368 8/19 (42%)
C2H2 Zn finger 587..607 CDD:275368 7/21 (33%)
C2H2 Zn finger 615..636 CDD:275368 2/20 (10%)
C2H2 Zn finger 644..664 CDD:275368 7/19 (37%)
C2H2 Zn finger 676..696 CDD:275368 2/19 (11%)
C2H2 Zn finger 704..722 CDD:275368 5/17 (29%)
rnNP_001262343.1 C2H2 Zn finger 490..510 CDD:275368 5/19 (26%)
C2H2 Zn finger 519..539 CDD:275368 8/19 (42%)
COG5048 543..>647 CDD:227381 45/161 (28%)
C2H2 Zn finger 547..567 CDD:275368 8/19 (42%)
zf-H2C2_2 559..586 CDD:463886 15/26 (58%)
C2H2 Zn finger 575..597 CDD:275368 9/50 (18%)
C2H2 Zn finger 605..625 CDD:275368 7/19 (37%)
C2H2 Zn finger 636..656 CDD:275368 6/20 (30%)

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