DRSC/TRiP Functional Genomics Resources

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Protein Alignment crol and ZSCAN1

DIOPT Version :9

Sequence 1:NP_001245993.1 Gene:crol / 34592 FlyBaseID:FBgn0020309 Length:962 Species:Drosophila melanogaster
Sequence 2:XP_006723212.1 Gene:ZSCAN1 / 284312 HGNCID:23712 Length:448 Species:Homo sapiens


Alignment Length:347 Identity:74/347 - (21%)
Similarity:115/347 - (33%) Gaps:101/347 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 IEDISQLFTYHEVFGKIHGDVVNHQ---LAAAHGGQLPPPPPLPPQVTSHAASAAAAAAAASTNN 116
            :||::|: ...||...:  |.|..|   ......|:.|.....|.|.:.....|.|||.|....:
Human   153 VEDLTQM-CQQEVLVSL--DSVEPQDWSFGEEEDGKSPRSQKEPSQASELILDAVAAAPALPEES 214

  Fly   117 --AAVAAVMASANAAAAAAAAASAG--------------------------------GGLPPATS 147
              .....:..|.:..|.|.|..:.|                                |.:..:..
Human   215 EWLETTQLQQSLHTRAEAEAPRAPGLLGSRARLPLKPSIWDEPEDLLAGPSSDLRAEGTVISSPK 279

  Fly   148 GNGGQQVTVTTTSSSTSSGG------STTSGGT-TTTAGELLMPKMEGGIHGVDGSGNGGNGGGQ 205
            |...|:::....:.:|...|      ..|.||| ...||..::|:             |..|   
Human   280 GPSAQRISPRRRNRNTDQSGRHQPSLKHTKGGTQEAVAGISVVPR-------------GPRG--- 328

  Fly   206 NVALAPDGTPIATGTHVCDICGKMFQFRYQLIVHRRYHSERKPFMCQVCGQGFTTSQDLTRHGKI 270
                   |.|..     |..||.:|.:....|.|::.|.|..||.|..||:.|..:..||.||||
Human   329 -------GRPFQ-----CADCGMVFTWVTHFIEHQKTHREEGPFPCPECGKVFLHNSVLTEHGKI 381

  Fly   271 HIGGPMFTCIVCFNVFANNTSLERHMKRHSTDK-PFACTICQKTFARKEHLDNHFRSHTGETPFR 334
            |:                   ||...|:....| |      :::...::.........:.:.||:
Human   382 HL-------------------LEPPRKKAPRSKGP------RESVPPRDGAQGPVAPRSPKRPFQ 421

  Fly   335 CQYCAKTFTRKEHMVNHVRKHT 356
            |..|.|.|....|:::|.:.||
Human   422 CSVCGKAFPWMVHLIDHQKLHT 443

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
crolNP_001245993.1 C2H2 Zn finger 223..243 CDD:275368 6/19 (32%)
C2H2 Zn finger 251..271 CDD:275368 9/19 (47%)
C2H2 Zn finger 279..299 CDD:275368 3/19 (16%)
COG5048 300..723 CDD:227381 12/58 (21%)
C2H2 Zn finger 307..327 CDD:275368 0/19 (0%)
C2H2 Zn finger 335..355 CDD:275368 6/19 (32%)
C2H2 Zn finger 363..383 CDD:275368
C2H2 Zn finger 391..411 CDD:275368
C2H2 Zn finger 419..439 CDD:275368
C2H2 Zn finger 447..467 CDD:275368
C2H2 Zn finger 475..495 CDD:275368
C2H2 Zn finger 503..523 CDD:275368
C2H2 Zn finger 531..551 CDD:275368
C2H2 Zn finger 559..579 CDD:275368
C2H2 Zn finger 587..607 CDD:275368
C2H2 Zn finger 615..636 CDD:275368
C2H2 Zn finger 644..664 CDD:275368
C2H2 Zn finger 676..696 CDD:275368
C2H2 Zn finger 704..722 CDD:275368
ZSCAN1XP_006723212.1 SCAN 75..162 CDD:280241 3/9 (33%)
C2H2 Zn finger 334..354 CDD:275368 6/19 (32%)
zf-H2C2_2 346..371 CDD:290200 10/24 (42%)
C2H2 Zn finger 362..382 CDD:275368 9/19 (47%)
C2H2 Zn finger 422..442 CDD:275368 6/19 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23226
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
11.100

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