DRSC/TRiP Functional Genomics Resources

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Protein Alignment crol and ZSCAN23

DIOPT Version :9

Sequence 1:NP_001245993.1 Gene:crol / 34592 FlyBaseID:FBgn0020309 Length:962 Species:Drosophila melanogaster
Sequence 2:NP_001012458.1 Gene:ZSCAN23 / 222696 HGNCID:21193 Length:389 Species:Homo sapiens


Alignment Length:166 Identity:64/166 - (38%)
Similarity:91/166 - (54%) Gaps:4/166 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly   386 QTPHQCDVCGKKYTRKEHLANHMRSHTNETPFRCEICGKSFSRKEHFTNHILWHTGETPHRCDFC 450
            |.|...|.|    .|:..|.....|.:.|.|:.|..|||||::......|...||||.|:.||.|
Human   222 QIPEYGDTC----DREGRLEKQRVSSSVERPYICSECGKSFTQNSILIEHQRTHTGEKPYECDEC 282

  Fly   451 SKTFTRKEHLLNHVRQHTGESPHRCSYCMKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDH 515
            .:.|:::..|..|.|.||||..::||.|.|.|::...|.:|:|.||||.|::|..|.|:|:|:..
Human   283 GRAFSQRSGLFQHQRLHTGEKRYQCSVCGKAFSQNAGLFHHLRIHTGEKPYQCNQCNKSFSRRSV 347

  Fly   516 MVNHVRQHTGESPHKCTYCTKTFTRKEHLTNHVRQH 551
            ::.|.|.||||.|::|..|.|.|....:|..|.:.|
Human   348 LIKHQRIHTGERPYECEECGKNFIYHCNLIQHRKVH 383

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
crolNP_001245993.1 C2H2 Zn finger 223..243 CDD:275368
C2H2 Zn finger 251..271 CDD:275368
C2H2 Zn finger 279..299 CDD:275368
COG5048 300..723 CDD:227381 64/166 (39%)
C2H2 Zn finger 307..327 CDD:275368
C2H2 Zn finger 335..355 CDD:275368
C2H2 Zn finger 363..383 CDD:275368
C2H2 Zn finger 391..411 CDD:275368 4/19 (21%)
C2H2 Zn finger 419..439 CDD:275368 7/19 (37%)
C2H2 Zn finger 447..467 CDD:275368 7/19 (37%)
C2H2 Zn finger 475..495 CDD:275368 8/19 (42%)
C2H2 Zn finger 503..523 CDD:275368 7/19 (37%)
C2H2 Zn finger 531..551 CDD:275368 6/19 (32%)
C2H2 Zn finger 559..579 CDD:275368
C2H2 Zn finger 587..607 CDD:275368
C2H2 Zn finger 615..636 CDD:275368
C2H2 Zn finger 644..664 CDD:275368
C2H2 Zn finger 676..696 CDD:275368
C2H2 Zn finger 704..722 CDD:275368
ZSCAN23NP_001012458.1 SCAN 44..156 CDD:128708
SCAN 45..132 CDD:280241
COG5048 <215..384 CDD:227381 64/166 (39%)
zf-C2H2 249..271 CDD:278523 7/21 (33%)
C2H2 Zn finger 251..271 CDD:275368 7/19 (37%)
zf-H2C2_2 264..288 CDD:290200 10/23 (43%)
C2H2 Zn finger 279..299 CDD:275368 7/19 (37%)
zf-H2C2_2 292..316 CDD:290200 12/23 (52%)
C2H2 Zn finger 307..327 CDD:275368 8/19 (42%)
zf-H2C2_2 323..344 CDD:290200 11/20 (55%)
C2H2 Zn finger 335..355 CDD:275368 7/19 (37%)
zf-H2C2_2 348..372 CDD:290200 11/23 (48%)
C2H2 Zn finger 363..383 CDD:275368 6/19 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23226
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
22.010

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