DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment crol and znf665

DIOPT Version :10

Sequence 1:NP_477243.1 Gene:crol / 34592 FlyBaseID:FBgn0020309 Length:962 Species:Drosophila melanogaster
Sequence 2:NP_001165008.1 Gene:znf665 / 100328608 XenbaseID:XB-GENE-6050027 Length:403 Species:Xenopus tropicalis


Alignment Length:417 Identity:173/417 - (41%)
Similarity:216/417 - (51%) Gaps:29/417 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly   248 PFMCQVCGQGFTTSQDLTRHGKIHIGGPMFTCIVCFNVFANNTSLERHMKRHSTDKPFACTICQK 312
            |..|..||:.|:....||.|.::|.|                            :|||.||.|.|
 Frog    15 PHECPECGKRFSGRNKLTIHYRVHTG----------------------------EKPFMCTKCGK 51

  Fly   313 TFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYV 377
            :|..|..|..|...||||.||.|..|.|:|.:|:.:..|...||||.|..|..|.|||.:|....
 Frog    52 SFREKHRLTEHQLIHTGEKPFMCTECGKSFRKKQSLTAHQLIHTGEKPFMCTECGKSFRQKHQLT 116

  Fly   378 NHYMWHTGQTPHQCDVCGKKYTRKEHLANHMRSHTNETPFRCEICGKSFSRKEHFTNHILWHTGE 442
            .|.:.|||:.|..|..|||.:.:|..|..|...|..|.||.|..|||||.:|:..|.|.|.||||
 Frog   117 AHQLIHTGEKPFMCTECGKSFRQKHRLTAHQLIHMGEKPFMCTECGKSFRQKQLLTQHQLIHTGE 181

  Fly   443 TPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSYCMKTFTRKEHLVNHIRQHTGETPFKCTYCT 507
            .|:.|..|.|.|.::..||:|.|.|||..|..|..|.|:|:.|.:...|.|.||||..|.||.|.
 Frog   182 KPYACTECDKQFHKRRSLLSHQRIHTGVKPFVCMECGKSFSNKTYFQRHQRIHTGEKLFSCTECG 246

  Fly   508 KAFTRKDHMVNHVRQHTGESPHKCTYCTKTFTRKEHLTNHVRQHTGDSPHRCSYCKKTFTRKEHL 572
            |....|..:.||.:.||||.|..||.|.|.||.|..|.:|.:.|||:.|..|:.|.|:||.|..|
 Frog   247 KCLITKSQLGNHYKVHTGEKPFSCTECGKRFTTKTKLGSHYKVHTGEKPFFCTECGKSFTTKSQL 311

  Fly   573 TNHVRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHT 637
            .:|..:|||:.|..|..|.|:||.|..||:|...|:.:.|..|..|.|.||.|..|.:|.: .||
 Frog   312 NSHYTVHTGEKPFSCTECCKSFTTKSQLNSHYTVHTGEKPFSCTECGKSFTTKAKLNSHYT-VHT 375

  Fly   638 GDRPFTCETCGKSFPLKGNLLFHQRSH 664
            |::||:|..|||||...|||..|||.|
 Frog   376 GEKPFSCTECGKSFVSNGNLTKHQRIH 402

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
crolNP_477243.1 C2H2 Zn finger 223..243 CDD:275368
C2H2 Zn finger 251..271 CDD:275368 7/19 (37%)
C2H2 Zn finger 279..299 CDD:275368 0/19 (0%)
COG5048 300..723 CDD:227381 163/365 (45%)
C2H2 Zn finger 307..327 CDD:275368 8/19 (42%)
C2H2 Zn finger 335..355 CDD:275368 6/19 (32%)
C2H2 Zn finger 363..383 CDD:275368 7/19 (37%)
C2H2 Zn finger 391..411 CDD:275368 7/19 (37%)
C2H2 Zn finger 419..439 CDD:275368 10/19 (53%)
C2H2 Zn finger 447..467 CDD:275368 8/19 (42%)
C2H2 Zn finger 475..495 CDD:275368 7/19 (37%)
C2H2 Zn finger 503..523 CDD:275368 7/19 (37%)
C2H2 Zn finger 531..551 CDD:275368 9/19 (47%)
C2H2 Zn finger 559..579 CDD:275368 8/19 (42%)
C2H2 Zn finger 587..607 CDD:275368 9/19 (47%)
C2H2 Zn finger 615..636 CDD:275368 8/20 (40%)
C2H2 Zn finger 644..664 CDD:275368 12/19 (63%)
C2H2 Zn finger 676..696 CDD:275368
C2H2 Zn finger 704..722 CDD:275368
znf665NP_001165008.1 COG5048 15..392 CDD:227381 166/405 (41%)
C2H2 Zn finger 18..38 CDD:275368 7/19 (37%)
C2H2 Zn finger 46..66 CDD:275368 8/19 (42%)
C2H2 Zn finger 74..94 CDD:275368 6/19 (32%)
C2H2 Zn finger 102..122 CDD:275368 7/19 (37%)
C2H2 Zn finger 130..150 CDD:275368 7/19 (37%)
C2H2 Zn finger 158..178 CDD:275368 10/19 (53%)
C2H2 Zn finger 186..206 CDD:275368 8/19 (42%)
C2H2 Zn finger 214..234 CDD:275368 7/19 (37%)
C2H2 Zn finger 242..262 CDD:275368 7/19 (37%)
C2H2 Zn finger 270..290 CDD:275368 9/19 (47%)
C2H2 Zn finger 298..318 CDD:275368 8/19 (42%)
C2H2 Zn finger 326..346 CDD:275368 9/19 (47%)
C2H2 Zn finger 354..374 CDD:275368 8/20 (40%)
C2H2 Zn finger 382..402 CDD:275368 12/19 (63%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.