DRSC/TRiP Functional Genomics Resources

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Protein Alignment crol and Gm4724

DIOPT Version :9

Sequence 1:NP_001245993.1 Gene:crol / 34592 FlyBaseID:FBgn0020309 Length:962 Species:Drosophila melanogaster
Sequence 2:XP_017169978.1 Gene:Gm4724 / 100043915 MGIID:3782904 Length:517 Species:Mus musculus


Alignment Length:447 Identity:173/447 - (38%)
Similarity:233/447 - (52%) Gaps:5/447 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly   258 FTTSQDLTRHGKIHIGGPMFTCIVCFNVFANNTSLERHMKRHSTDKPFACTICQKTFARKEHLDN 322
            |.||:...||.:..........|.|...||..:..:||..:|:.:|...|..|.|.|.....|..
Mouse    75 FQTSRSHGRHERSCSAEQPSEFIQCGKAFAYESGRQRHQIKHNGEKHHDCNQCGKDFRTWNVLQI 139

  Fly   323 HFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQT 387
            |.|:||||.|:.|:.|.|.|.|..|:..|.|.|.||..:.|:.|.|:|.|:.:...|...|||:.
Mouse   140 HKRTHTGEKPYDCKQCGKVFARSCHLQIHNRTHAGEKQYECNQCGKAFKRRINLQIHKRTHTGEK 204

  Fly   388 PHQCDVCGKKYTRKEHLANHMRSHTNETPFRCEICGKSFSRKEHFTNHILWHTGETPHRCDFCSK 452
            |::|:.|||.:.....|..|.|:||.|.|:.|:.|||:||:..|...|...||||.|:.|:.|.|
Mouse   205 PYECNQCGKAFASSGELQKHKRTHTGEKPYECKQCGKAFSQSSHLRIHKRTHTGEKPYECNQCGK 269

  Fly   453 TFTRKEHLLNHVRQHTGESPHRCSYCMKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMV 517
            .|.|...|..|.|.||||.|:.|..|.|.|....||..|.|.|||:.|::|..|.|||.....:.
Mouse   270 AFARSGDLQKHKRTHTGEKPYECKQCGKAFAHSSHLHKHERTHTGDKPYECKQCGKAFAVIYTLQ 334

  Fly   518 NHVRQHTGESPHKCTYCTKTFTRKEHLTNHVRQHTGDSPHRCSYCKKTFTRKEHLTNHVRLHTGD 582
            .|.|.|||:.|::|..|.|.|.....|..|.|.|||:.|::|..|.|.|.|..||..|.|.|||:
Mouse   335 MHKRTHTGDKPYECKQCGKAFAVIYTLQMHKRTHTGEKPYKCKQCGKAFARSCHLRIHKRTHTGE 399

  Fly   583 SPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFTCETC 647
            .|::|..|.|.|.....|..|.|.|:.:.|:.||.|.|.|..:..|..| .|.|||::|:.|..|
Mouse   400 KPYECNQCGKAFAESSTLQIHNRTHTGEKPYECNQCGKAFITRRVLQIH-KRTHTGEKPYECNQC 463

  Fly   648 GKSFPLKGNLLFHQRSHTKGQEMERPFACEKCPKNFICKGHLVSHMRSHSGEKPHAC 704
            ||:|....:|..|:|:||.    |:|:.|..|.|.|.....|..|.|:::||:.:.|
Mouse   464 GKAFARSCDLQKHKRTHTG----EKPYECNHCGKAFAQSSSLRIHKRTYTGERQYEC 516

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
crolNP_001245993.1 C2H2 Zn finger 223..243 CDD:275368
C2H2 Zn finger 251..271 CDD:275368 5/12 (42%)
C2H2 Zn finger 279..299 CDD:275368 6/19 (32%)
COG5048 300..723 CDD:227381 161/405 (40%)
C2H2 Zn finger 307..327 CDD:275368 7/19 (37%)
C2H2 Zn finger 335..355 CDD:275368 8/19 (42%)
C2H2 Zn finger 363..383 CDD:275368 6/19 (32%)
C2H2 Zn finger 391..411 CDD:275368 7/19 (37%)
C2H2 Zn finger 419..439 CDD:275368 8/19 (42%)
C2H2 Zn finger 447..467 CDD:275368 8/19 (42%)
C2H2 Zn finger 475..495 CDD:275368 8/19 (42%)
C2H2 Zn finger 503..523 CDD:275368 7/19 (37%)
C2H2 Zn finger 531..551 CDD:275368 7/19 (37%)
C2H2 Zn finger 559..579 CDD:275368 9/19 (47%)
C2H2 Zn finger 587..607 CDD:275368 7/19 (37%)
C2H2 Zn finger 615..636 CDD:275368 8/20 (40%)
C2H2 Zn finger 644..664 CDD:275368 8/19 (42%)
C2H2 Zn finger 676..696 CDD:275368 7/19 (37%)
C2H2 Zn finger 704..722 CDD:275368 1/1 (100%)
Gm4724XP_017169978.1 KRAB 22..63 CDD:396083
COG5048 93..505 CDD:227381 163/416 (39%)
C2H2 Zn finger 98..116 CDD:275368 5/17 (29%)
C2H2 Zn finger 124..144 CDD:275368 7/19 (37%)
C2H2 Zn finger 152..172 CDD:275368 8/19 (42%)
C2H2 Zn finger 180..200 CDD:275368 6/19 (32%)
C2H2 Zn finger 208..228 CDD:275368 7/19 (37%)
C2H2 Zn finger 236..256 CDD:275368 8/19 (42%)
C2H2 Zn finger 264..284 CDD:275368 8/19 (42%)
C2H2 Zn finger 292..312 CDD:275368 8/19 (42%)
C2H2 Zn finger 320..340 CDD:275368 7/19 (37%)
C2H2 Zn finger 348..368 CDD:275368 7/19 (37%)
C2H2 Zn finger 376..396 CDD:275368 9/19 (47%)
C2H2 Zn finger 404..424 CDD:275368 7/19 (37%)
C2H2 Zn finger 432..452 CDD:275368 8/20 (40%)
C2H2 Zn finger 460..480 CDD:275368 8/19 (42%)
C2H2 Zn finger 488..507 CDD:275368 6/18 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100020
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.900

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