DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tsp33B and Tspan18

DIOPT Version :10

Sequence 1:NP_523552.1 Gene:Tsp33B / 34590 FlyBaseID:FBgn0032376 Length:326 Species:Drosophila melanogaster
Sequence 2:NP_001101220.1 Gene:Tspan18 / 311210 RGDID:1560411 Length:248 Species:Rattus norvegicus


Alignment Length:280 Identity:54/280 - (19%)
Similarity:97/280 - (34%) Gaps:103/280 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 RASVYLHLLLITEAVI-----GLLILVVTAYYHTVLTGYLS------DIECRLVYGYLFGIYVFG 60
            |..|..:.||.|.|.:     |||.|:          |:|.      :..|.|::.:||.:.:|.
  Rat    42 REIVATNPLLTTGAYVVLAMGGLLFLL----------GFLGCCGAVRENRCLLLFFFLFILIIFL 96

  Fly    61 AQV---VVTFLCSIAMWRRIWRRRCTPNIRLLLSVWAFYSCVIIASGFGCVWNLYRGVDVLENAA 122
            .::   ::.|:....:.|..:.:..|.:                          |:|    :|..
  Rat    97 VELSAAILAFIFREHLTREFFTKELTKH--------------------------YQG----DNDT 131

  Fly   123 DTSLTRGIDMYYSCPEWKLLWDGLQWHKECCGVHGYKDW----------MNAEWMPRRENNCTSM 177
            |.              :...|:.:.....||||:|.:|:          ::.|.:|:        
  Rat   132 DV--------------FSATWNSVMITFGCCGVNGPEDFKLASVFRLLTLDTEEVPK-------- 174

  Fly   178 VLAPFACCKRSCDSCFNNFLPSEGQSIGGNSRQPFPALTVDSINANGCLPAFVSAVWNCFYI--L 240
                 |||:|...:.....|..|...:|   |.||       ||..||....::......|:  .
  Rat   175 -----ACCRREPQTRDGVVLSREECQLG---RNPF-------INKQGCYTVILNTFETYVYLAGA 224

  Fly   241 MALWVLALKFLIVLCCMTKF 260
            .|:.|||::..:::..|..|
  Rat   225 FAIGVLAIELFLMVFAMCLF 244

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp33BNP_523552.1 CD151_like_LEL 112..237 CDD:239408 27/134 (20%)
Tspan18NP_001101220.1 Tetraspanin 10..245 CDD:459767 54/280 (19%)
uroplakin_I_like_LEL 105..218 CDD:239409 30/179 (17%)

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