DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tsp33B and Rom1

DIOPT Version :10

Sequence 1:NP_523552.1 Gene:Tsp33B / 34590 FlyBaseID:FBgn0032376 Length:326 Species:Drosophila melanogaster
Sequence 2:NP_001009690.1 Gene:Rom1 / 309201 RGDID:1306070 Length:351 Species:Rattus norvegicus


Alignment Length:239 Identity:59/239 - (24%)
Similarity:88/239 - (36%) Gaps:65/239 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    78 WRRRCTPNIRLLLSVWAFYSCVIIASGFGCVW----NLYRGVDVLENAADTSLT--RGIDMYYSC 136
            ||...||    ||.|.......::..|.|...    :|::|   ||.....:|.  :..::...|
  Rat    96 WRGVLTP----LLVVGTAAGGGLLTLGLGLALALPVSLHQG---LEEGLQAALAHYKDTEVPGHC 153

  Fly   137 PEWKLLWDGLQWHKECCGVHGYKDWMNAEWMPRR-------------ENNCTSMVL---APFACC 185
             :.|.|.|.||....|||.||||||...:|:..|             ::|...:.|   .||:||
  Rat   154 -QAKRLMDELQLRYHCCGRHGYKDWFGVQWVSSRYLDPNDQDVVDRIQSNVEGLYLIDGVPFSCC 217

  Fly   186 K-RSCDSCFNNFLPSEGQSIGGNSRQPFPALTVDSIN--ANGC----------LPAFVSAVWNCF 237
            . .|...|..:.|.........:.|||       ::|  |.||          |...:.::....
  Rat   218 NPHSPRPCLQSQLSDPYAHPLFDPRQP-------NLNLWAQGCHEVLVGHLQGLSGTLGSILAVT 275

  Fly   238 YILMALWVLALKFLIVLCCMTKFIVHRQNEGDGCDNVGLTDDDG 281
            .:|..|.:|.|::|           ....||.|    |:.|.:|
  Rat   276 LLLQVLVLLGLRYL-----------QTALEGLG----GVIDGEG 304

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp33BNP_523552.1 CD151_like_LEL 112..237 CDD:239408 38/155 (25%)
Rom1NP_001009690.1 peripherin_like_LEL 128..264 CDD:239415 38/146 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 329..351
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.