DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tsp33B and Tspan1

DIOPT Version :10

Sequence 1:NP_523552.1 Gene:Tsp33B / 34590 FlyBaseID:FBgn0032376 Length:326 Species:Drosophila melanogaster
Sequence 2:NP_001004236.1 Gene:Tspan1 / 298436 RGDID:1303308 Length:241 Species:Rattus norvegicus


Alignment Length:278 Identity:56/278 - (20%)
Similarity:99/278 - (35%) Gaps:59/278 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 QPFRRASVYLHLLLITEAVIGLLILVVTAYYHTVLTGYLSDIECRLVYGYL---------FGIYV 58
            |.|:...|.:.|..:...:.|..:|.|..:.....|.:|.      .:|.|         .|.::
  Rat     2 QCFKFIKVMMILFNLLIFLCGAALLAVGIWVSVDGTSFLK------AFGSLSSSAMQFVNVGYFL 60

  Fly    59 FGAQVVVTFLCSIAMWRRIWRRRCTPNIRLLLSVWAFYSCVIIASGFGCVWNLYRGVDVLENAAD 123
            ..|..|:..|..:..:......:|     :|:..::....:.||...|.|..|     |....|:
  Rat    61 IAAGAVLFILGFLGCYGAHSENKC-----VLMMFFSILLIIFIAEIAGAVVAL-----VYTTMAE 115

  Fly   124 TSLT----RGIDMYYSC-PEWKLLWDGLQWHKECCGVHGYKDWMNAEWMPRRENNCTSMVLAPFA 183
            ..||    ..|:..|.. .|:..:|:.......|||.:.|.|:.::.::  :||.    |..|| 
  Rat   116 QFLTFLVVPAIEKDYGYQTEFTQVWNSTMEGLHCCGFNNYTDFNSSRFV--KENK----VFPPF- 173

  Fly   184 CCKRSCDSCFNNFLPSEGQSIGGNSRQPFPALTVDSINANGCLPAFVSAV-WNCFYI------LM 241
            ||..:.||               ::.:|.......|:|..||....:..: .|...:      :.
  Rat   174 CCANNTDS---------------HTVEPCTEDKAKSMNVQGCFKQILQKIRTNAVTVGGVAVGVA 223

  Fly   242 ALWVLALKFLIVLCCMTK 259
            ||.:.|:...:.|.|..|
  Rat   224 ALELAAMVVSMYLYCNLK 241

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp33BNP_523552.1 CD151_like_LEL 112..237 CDD:239408 28/130 (22%)
Tspan1NP_001004236.1 Tetraspanin 7..>151 CDD:459767 29/159 (18%)
uroplakin_I_like_LEL 106..211 CDD:239409 28/131 (21%)

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