DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment spag4 and Sun1

DIOPT Version :10

Sequence 1:NP_609510.2 Gene:spag4 / 34581 FlyBaseID:FBgn0032368 Length:275 Species:Drosophila melanogaster
Sequence 2:XP_006249003.1 Gene:Sun1 / 360773 RGDID:1359142 Length:944 Species:Rattus norvegicus


Alignment Length:168 Identity:48/168 - (28%)
Similarity:92/168 - (54%) Gaps:8/168 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly   113 INYASEELGARIINVK-AHSIDGTNIIRSLLGLD---FSTNPPVNMIRTGLSPGSCFGFNGSRAT 173
            :::|.|..|..|::.: :.:.:....:.||.|:.   ||.:|.| :|:..:.||:|:.|.||:..
  Rat   774 VDFALESGGGSILSTRCSETYETKTALLSLFGVPLWYFSQSPRV-VIQPDIYPGNCWAFKGSQGY 837

  Fly   174 VTLHLARTIIVEAITLTHVAREMTPDLCVKSAPKNFDVYGLRSE-NSKRELLGQWSYDNAANKRT 237
            :.:.|:..|.....|:.|:.:.::|...:.|||::|.||||.:| ..:.:.||:::||...:...
  Rat   838 LVVRLSMKIYPTTFTMEHIPKTLSPTGNISSAPRDFAVYGLETEYQEEGQPLGRFTYDQEGDSLQ 902

  Fly   238 QSYSV-RSDTFFRNLDFSFNSNHG-ANSTCIYRVEVYG 273
            ..::: |.|..|:.::....||.| ...||:||..|:|
  Rat   903 MFHTLERPDQGFQIVELRVLSNWGHPEYTCLYRFRVHG 940

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spag4NP_609510.2 Sad1_UNC 148..274 CDD:400199 39/129 (30%)
Sun1XP_006249003.1 MRP 93..446 CDD:430576
CALCOCO1 536..>699 CDD:462303
SUN1_cc1 584..637 CDD:410605
Sad1_UNC 808..942 CDD:400199 41/134 (31%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.