DRSC/TRiP Functional Genomics Resources

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Protein Alignment salm and sall4

DIOPT Version :9

Sequence 1:NP_723670.2 Gene:salm / 34569 FlyBaseID:FBgn0261648 Length:1365 Species:Drosophila melanogaster
Sequence 2:NP_001074078.1 Gene:sall4 / 572527 ZFINID:ZDB-GENE-060328-2 Length:1091 Species:Danio rerio


Alignment Length:1393 Identity:345/1393 - (24%)
Similarity:500/1393 - (35%) Gaps:535/1393 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 RARSADKDIGSD---QEENGGCSPLTTATTTASPSRSPEPEEEQPEEQSTSEQSIPEQSTPDHQL 105
            |.:|..:.|.||   ..|||      ....:.|.....:.:..:.||....|:...|.......|
Zfish     4 RKQSKPQHINSDDPASTENG------ILHNSQSEEEGSDAKRRRSEETRVCEKCCAEFFDEAEFL 62

  Fly   106 ENDIKSEAKSEIEPVEDNNNRVAMTKPSSEEREPNASGSMPSSPVAEASAEEAATERTPEKEKEK 170
            |::.......::..::|.:.  :...|...:|.|   |.:.|.|..:::...:......::..|.
Zfish    63 EHERNCTKSQQVVIMKDGDG--SEVPPEFSQRSP---GDVLSDPCDQSTNSYSKHGAESDEMMEG 122

  Fly   171 DVEVDVEKP---DEAPSSA---VPSTEVTLPGGAGAPVTLEAIQNMQMAIAQFAAKTIANGSNGA 229
            :..::.:.|   |:..|.:   |.|:::     ..:.||||::...::|:.|       :.||.:
Zfish   123 EFMLNQDNPSNHDQEVSGSPGYVASSKL-----QDSNVTLESMAATKVAVTQ-------HSSNSS 175

  Fly   230 DNEAAMKQ--------LAFLQQTLFNLQQQQLFQIQLIQQLQSQLALNQAKQEEDTEEDADQEQD 286
            ..::...|        :..:.:.|.:||||||.||||.:|::.|:|:                  
Zfish   176 SQKSPPPQPHQDTLLAIPMILEQLVSLQQQQLQQIQLTEQIRIQVAM------------------ 222

  Fly   287 QEQETDTYEEEERIADMELRQKAEARMAEAKA-----RQHLINAGVPLRESSGSPAESLKRRREH 346
                         :|...|.....|.|...||     .|.|..|...:.:.:||.:.||:..:: 
Zfish   223 -------------VAPPSLHAAVGAVMDPLKALGAHLSQQLSAAAALIGKRTGSQSLSLEALKQ- 273

  Fly   347 DHESQPNRRPSLDNTHKADTAQDALAKLKEMENTPLPFGSDLASSIITNHDDLPEPNSLDLLQKR 411
                                     |||.:....|......|.|..:.     |:...|..|..|
Zfish   274 -------------------------AKLPQSATIPTSLPGGLGSIPLK-----PDLKGLPDLASR 308

  Fly   412 AQEVLDSASQGILA-----NSMADDFAFGEKS-GEGKGRNEP--------FFKHRCRYCGKVFGS 462
            ...:|.. |.|::.     |::|......:|: .:|...:||        .|||:|::|||.||:
Zfish   309 LPALLPQ-SPGVIGLQSPFNNLATSMDPSKKAKTKGPVVSEPPKNVSVEHSFKHKCKFCGKTFGN 372

  Fly   463 DSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHAQKFPHVPMNATPIPEHMDKFHPPLL 527
            |||||||:||||||||||||:||:|||||||||||||||.:|:||:.||..|:|||        |
Zfish   373 DSALQIHLRSHTGERPFKCNICGNRFTTKGNLKVHFQRHKEKYPHIKMNPHPVPEH--------L 429

  Fly   528 DQMSPTDSSP----------NHSPAPPPLGSAPASFPPAFPGLQNLYRPPMEILKSLGAAAPHQY 582
            |.|...:..|          ..|...|.|| .|.:.|||.|                        
Zfish   430 DNMPSNNGIPYGMSVPMEENGFSETKPVLG-VPTTGPPAGP------------------------ 469

  Fly   583 FPQELPTDLRKPSPQLDEDEPQVKNEPVEEKDQREEHEQEMAECSEPEPEPLPLEVRIKEERVEE 647
                                                                             
Zfish   470 ----------------------------------------------------------------- 469

  Fly   648 QEQVKQEDHRIEPRRTPSPSSEHRSPHHHRHSHMGYPPVVQPIQPAALMHPQSSPGSQSHLDHLP 712
                                               :|||:|..:|:.                  
Zfish   470 -----------------------------------HPPVLQAFKPSF------------------ 481

  Fly   713 TPGQLPPREDFFAERFPLNFTTAKMLSPEHHSPVRSPAGGALPPGVPPPPHHHPHHMARSPFFNP 777
               .:|...|.:::|                 |..|.:.||              .::...|...
Zfish   482 ---DIPAAGDPYSQR-----------------PSSSGSDGA--------------SISSGMFGQD 512

  Fly   778 I------KHEMAALLPRPHSNDNSWENFIEVSNTCETMKLKELMK--NKKISDPNQCVVCDRVLS 834
            |      |....|::...|.|.||    :...|...|.||::::.  .|:.:|||:||:|.||||
Zfish   513 IAGSDQSKDSPDAMVGLHHINGNS----LTGENGSGTAKLQQMVDCLEKRTNDPNECVICHRVLS 573

  Fly   835 CKSALQMHYRTHTGERPFKCRICGRAFTTKGNLKTHMAVHKIRPPMRNFHQCPVCHKKYSNALVL 899
            |:|:|:|||||||||||:||:||||||:||||||.|..||:...|::..|.||:||||::||:||
Zfish   574 CQSSLKMHYRTHTGERPYKCKICGRAFSTKGNLKAHYGVHRANTPLKMQHSCPICHKKFTNAVVL 638

  Fly   900 QQHIRLHTGEPTDLTP---EQIQAAEIRDP-------------PPSMMPGHF-MNPFAAAAFHFG 947
            |||||:|.|.....||   .|.::.|..|.             ..||....| ::......:..|
Zfish   639 QQHIRMHMGGQIPNTPLPENQFESPEALDSSMTEDKTIDSNGHEESMEEQDFELDNQEKLNYSTG 703

  Fly   948 ---------ALPGGPGGPPG----PNH-----GAHN----GALGSESSQGDMDDNMDCGE-DYDD 989
                     ..||.|....|    .||     .|.|    .:..|||..|..|..:..|| ||  
Zfish   704 PQPVTKDDQTFPGQPSMFTGITALENHMKNLTSALNLQRQSSTASESDSGLKDSPLGSGEVDY-- 766

  Fly   990 DVSSEHLSNSNLEQEGDRSRSGDDFKSLLFEQKLRIDATGVVNTNPVRPRSSASSHGHSVGSTSA 1054
                          :.|||....|  |:.|.....||.          |.|:        |.:.:
Zfish   767 --------------KNDRSPVVSD--SVSFHSLSPIDG----------PPSN--------GPSKS 797

  Fly  1055 PTSPSVHASSQVIKRSSSPARSEASQGALDLTPRAAPTSSSSSRSPLPKEKPVSPPSLPRSPSGS 1119
            |.|.::..|.:....:.:|.....:.||||||       ||.:..|: ||:|           |.
Zfish   798 PESTNLDDSVKSRPDTDAPQDFSENNGALDLT-------SSFTSKPI-KEEP-----------GL 843

  Fly  1120 SHASANILTSPLPPTVGIDCLPPGLQHHLQQQHQHLMQQQAAVAAAAAAQHHHHQQMAALHQHQE 1184
            |.||....:|.||    ...:||.|                                        
Zfish   844 SFASGEYGSSQLP----FMRVPPSL---------------------------------------- 864

  Fly  1185 QLRREAAEAQQKAAAAAAAAAAAAAAQRQTPPQARDQRQEGGPGAGPPPNPLMGARPPFGMFPNL 1249
                                   ...:.|.||:..                 |||.   |::   
Zfish   865 -----------------------VKLEMQIPPETP-----------------MGAH---GLY--- 883

  Fly  1250 PLFPPATTQNMCNAMNQIAQSVMPAAPFNPLALSGVRGST---TCGICYKTFPCHSALEIHYRSH 1311
                          .:|:.|..  |.|  |.:.|..|.||   .|.:|.|.|...|||:||.|:|
Zfish   884 --------------SSQLPQGA--ATP--PASSSAPRRSTKQHLCNMCGKNFSSASALQIHERTH 930

  Fly  1312 TKERPFKCSICDRGFTTKGNLKQHMLTH 1339
            |.|:||.||||.|.||||||||.|:.||
Zfish   931 TGEKPFACSICGRAFTTKGNLKVHVGTH 958

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
salmNP_723670.2 zf-C2H2 451..473 CDD:278523 15/21 (71%)
C2H2 Zn finger 453..473 CDD:275368 14/19 (74%)
zf-H2C2_2 465..490 CDD:290200 21/24 (88%)
C2H2 Zn finger 481..501 CDD:275368 17/19 (89%)
C2H2 Zn finger 826..846 CDD:275368 14/19 (74%)
zf-H2C2_2 838..863 CDD:290200 20/24 (83%)
zf-C2H2_2 854..922 CDD:289522 38/70 (54%)
C2H2 Zn finger 854..874 CDD:275368 14/19 (74%)
C2H2 Zn finger 886..906 CDD:275368 15/19 (79%)
C2H2 Zn finger 1291..1311 CDD:275368 10/19 (53%)
zf-H2C2_2 1303..1328 CDD:290200 16/24 (67%)
C2H2 Zn finger 1319..1339 CDD:275368 14/19 (74%)
sall4NP_001074078.1 zf-C2H2 361..383 CDD:278523 15/21 (71%)
C2H2 Zn finger 363..383 CDD:275368 14/19 (74%)
zf-H2C2_2 375..400 CDD:290200 21/24 (88%)
C2H2 Zn finger 391..411 CDD:275368 17/19 (89%)
C2H2 Zn finger 565..585 CDD:275368 14/19 (74%)
zf-H2C2_2 577..602 CDD:290200 20/24 (83%)
C2H2 Zn finger 593..613 CDD:275368 14/19 (74%)
zf-C2H2 623..645 CDD:278523 16/21 (76%)
C2H2 Zn finger 625..645 CDD:275368 15/19 (79%)
lambda-1 882..>929 CDD:212564 18/67 (27%)
C2H2 Zn finger 910..930 CDD:275368 10/19 (53%)
zf-H2C2_2 922..947 CDD:290200 16/24 (67%)
C2H2 Zn finger 938..958 CDD:275368 14/19 (74%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 54 1.000 Domainoid score I11211
eggNOG 1 0.900 - - E1_KOG1074
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 428 1.000 Inparanoid score I1708
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D130294at33208
OrthoFinder 1 1.000 - - FOG0001008
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23233
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X498
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1110.930

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