DRSC/TRiP Functional Genomics Resources

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Protein Alignment salm and sall3a

DIOPT Version :9

Sequence 1:NP_723670.2 Gene:salm / 34569 FlyBaseID:FBgn0261648 Length:1365 Species:Drosophila melanogaster
Sequence 2:XP_005157904.1 Gene:sall3a / 560775 ZFINID:ZDB-GENE-020228-4 Length:1322 Species:Danio rerio


Alignment Length:1544 Identity:398/1544 - (25%)
Similarity:570/1544 - (36%) Gaps:563/1544 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 SPSRSPEPEEEQPEEQSTSEQSIPEQSTPDHQLENDIKSEAKSEIEP------------------ 119
            |..:..:|::.:.:|..|..:.:||..:.:...::|..:|::|..|.                  
Zfish     2 SRRKQAKPQQLRSDEDPTLLELLPEHVSGEGVDDSDSGNESRSGSEETHVCEKCCAEFFKWSDFC 66

  Fly   120 --------------VEDNNNRVAMTKPSSEE--REPNASGSMPSSPVAEASAEEAATERTP---- 164
                          :.||.    :|...:::  .||:...|..|.|.....|.|.:...|.    
Zfish    67 EHLKTCTKNPLVLIISDNE----VTSDPAQDYLPEPSPVPSCVSDPANSEDAVEVSHMPTEGDEG 127

  Fly   165 -----------EKEKE-KDVEVDVEK---PDEAPSSAVPSTEVTLP--------GGAG-----AP 201
                       |||.| .:||:..||   ||:..:.|.|  :::||        .|||     ..
Zfish   128 AEMMLESGAVLEKEDEPMEVELSPEKPIDPDDPVTLAEP--DISLPPLEDHKQSSGAGYSIPSTN 190

  Fly   202 VTLEAIQNMQMAIAQFAAKTIANGSNGA-DNEAAMKQLAFLQQTLFNLQQQQLFQIQLIQQLQSQ 265
            ||||.:...::|:|||     :.|:.|| .:|.:...:..:...|..||||||.|::||:|::||
Zfish   191 VTLETLHGTRVAVAQF-----SQGARGALASEVSTMAIPMILDQLMALQQQQLRQLKLIEQIRSQ 250

  Fly   266 LAL--NQAKQEEDTEEDADQEQDQEQETDTYEEEERIADMELRQKAEARMAEAKARQHLINAGVP 328
            :||  |||..:.......|                                      |.|||.:.
Zfish   251 VALINNQAPTQTAVSHKVD--------------------------------------HSINAALQ 277

  Fly   329 LRESSGSPAESLKRRREHDHESQPNR-------RPSLDNTHKADT----AQDALAKLKEMENTPL 382
            :..||..||             .|.:       .|.::..|..::    |..|::...::..|.:
Zfish   278 VPSSSSIPA-------------MPGQLHLRGFITPPINQLHMNNSLNVQASVAVSSALDVACTSV 329

  Fly   383 -PFGSDLASS------------------------------------------------------- 391
             |.|..||||                                                       
Zfish   330 PPAGGQLASSGMKSNIAINSLYPTTSNGVSPQMPPCSVSISSSSCTSSSTGTGGEINCGISLPRN 394

  Fly   392 -----IITNHDDLPEPNSLDLLQKRAQEVLDSASQGILANSMA---------DDFAFGEKSGEGK 442
                 .:|:...|..|:||.|:..      .|::..|..|.:|         |..:...|..:.|
Zfish   395 TPSPLTLTHGRLLTSPSSLPLVPH------SSSNSVIFPNPLASIAATTNALDPLSALMKHRKAK 453

  Fly   443 GRN-----------EPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKV 496
            ..|           :|||||:||:|.||||||||||||:||||||||||||:||:||:|||||||
Zfish   454 PPNVSVFDTKPSSEDPFFKHKCRFCAKVFGSDSALQIHLRSHTGERPFKCNICGNRFSTKGNLKV 518

  Fly   497 HFQRHAQKFPHVPMNATPIPEHMDKFHPPLLDQMSPTDSSPNHSPAPPP-------LGSAPASFP 554
            |||||.:|:||:.||..|:||::|..         ||.|...:..:.||       |.|.|  ..
Zfish   519 HFQRHKEKYPHIQMNPYPVPEYLDNV---------PTSSGIPYGMSLPPEKPVTTWLDSKP--IL 572

  Fly   555 PAFPGLQNLYRPPM--EILKSLG---AAAPHQYFPQELPTDLRKPSPQLDEDEPQVKNEPVEEKD 614
            |..|....|..||.  .|::|.|   :.:|....||       :|||                  
Zfish   573 PTIPTSVALQLPPTIPSIIESYGDSTSFSPLNRSPQ-------RPSP------------------ 612

  Fly   615 QREEHEQEMAECSEPEPEPLPLEVRIKEERVEEQEQVKQEDHRIEPRRTPSPSSEHRSPHHHRHS 679
                   ..:||:...|..|..|..|        .|:..         :|.|:....:       
Zfish   613 -------PSSECTSLSPNHLITETSI--------AQISS---------SPQPNLASNT------- 646

  Fly   680 HMGYPPVVQPIQPAALMHPQSSPGSQSHLDHLP-----TPGQLPPREDFFAERFPLNF-TTAKML 738
                |||   ::|.||              |||     .||:........::...... ||....
Zfish   647 ----PPV---LKPEAL--------------HLPPNSTTRPGETSISTTSISQVISTTIVTTTCST 690

  Fly   739 SPEHHSPVRSPAGGALPPGVPPPPHHHPHHMARSPFFNPIKHEMAALLPRPHSNDNSWENFIEVS 803
            ..:...||.|.:..:           ||.....|..|.| |.....||              :..
Zfish   691 RTQLTDPVNSSSAVS-----------HPSLQISSNQFKP-KFPFGGLL--------------DSM 729

  Fly   804 NTCETMKLKELMKN--KKISDPNQCVVCDRVLSCKSALQMHYRTHTGERPFKCRICGRAFTTKGN 866
            .|.||.||::|::|  ||::||||||:|.|||||:|||:||||.|||||||||:|||||||||||
Zfish   730 QTSETSKLQQLVENIDKKMTDPNQCVICHRVLSCQSALKMHYRIHTGERPFKCKICGRAFTTKGN 794

  Fly   867 LKTHMAVHKIRPPMRNFHQCPVCHKKYSNALVLQQHIRLHTGEPTDLTPEQIQAAEIRDPPPSMM 931
            ||||..||:.:||:|..|.||:|.||::||:|||||||:|.|.....||               :
Zfish   795 LKTHFGVHRSKPPLRVQHSCPICQKKFTNAVVLQQHIRMHMGGQIPNTP---------------L 844

  Fly   932 PGHFMNPFAAAAFHFGALPGGPGGPPGPNHGAHNGALGSESSQGDMDDNMDCGEDYDDDVSSEHL 996
            |..|.:..|..:|.                                :.::|...:|||::..|  
Zfish   845 PDTFQDTDADLSFD--------------------------------EKSLDAMSNYDDELIDE-- 875

  Fly   997 SNSNLEQE-GDRSRSGDDFKSL---------------------LFEQKLRID--ATGVVNTNPVR 1037
            .:..||.| |.:..:.|..|.|                     .||.::::.  |..:.::..|:
Zfish   876 MDQALEDETGLKDENMDLHKQLHLYSEMSPSTSPPTSLISSIGAFENEMKLSDPAVNITHSFSVK 940

  Fly  1038 PRSSASS--------------------HGHSVGSTSAPTSPSVHASSQVIKRSSSPARSEASQGA 1082
            |..:.|.                    ..||||                     |||:||:|...
Zfish   941 PTENGSGVDGVNGDMLKNDLSSTLVDLENHSVG---------------------SPAQSESSGSM 984

  Fly  1083 LDLTPRAAPTSSSSSRSPLPKEKPVSPPSLPRSPSGSSHASANILTSPLPPTVGIDCLPPGLQHH 1147
            |.|:|  ..:.|.|.||              :||..:|.:....|||                  
Zfish   985 LALSP--TYSQSESHRS--------------KSPQANSSSKDEALTS------------------ 1015

  Fly  1148 LQQQHQHLMQQQAAVAAAAAAQHHHHQQMAALHQHQEQLRREAAEAQQKAAAAAAAAAAAAAAQR 1212
             ...|..:..:|..:.:..:      :...||.....|..|...:.:...:..........:...
Zfish  1016 -TSAHAMVKSEQLDIHSPGS------ENTGALDLTATQPTRSFVKDENPFSLLFLGRDRGLSTPS 1073

  Fly  1213 QTPPQARDQRQEGGPGAGPPPNPLMGARPPFGMFPNLPLFPPATTQNMCNAMNQIAQSVMP-AAP 1276
            ....::...:.|.  |...||....|...|.|     |..|.||.|      ..|:.::.| .||
Zfish  1074 NISSESSTVKFEN--GHSKPPALCEGPHLPVG-----PQVPTATAQ------TTISSNITPMLAP 1125

  Fly  1277 FNPLALSGVRGSTTCGICYKTFPCHSALEIHYRSHTKERPFKCSICDRGFTTKGNLKQHMLTH-- 1339
            ..|..........:||   |.|...|||:||.|:||.|:||.||||.|.||||||||.||.||  
Zfish  1126 PPPRRTPKQHNCHSCG---KNFSSASALQIHERTHTGEKPFGCSICGRAFTTKGNLKVHMGTHMW 1187

  Fly  1340 -------------------------KIRDMEQETFRNRAVKY-MSEWNE 1362
                                     |..:|.|:....||:.. ...||:
Zfish  1188 NNAPARRGRRLSVENPMALLGGDAIKFSEMFQKDLAARAINVDPGFWNQ 1236

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
salmNP_723670.2 zf-C2H2 451..473 CDD:278523 17/21 (81%)
C2H2 Zn finger 453..473 CDD:275368 16/19 (84%)
zf-H2C2_2 465..490 CDD:290200 21/24 (88%)
C2H2 Zn finger 481..501 CDD:275368 16/19 (84%)
C2H2 Zn finger 826..846 CDD:275368 15/19 (79%)
zf-H2C2_2 838..863 CDD:290200 21/24 (88%)
zf-C2H2_2 854..922 CDD:289522 40/67 (60%)
C2H2 Zn finger 854..874 CDD:275368 16/19 (84%)
C2H2 Zn finger 886..906 CDD:275368 14/19 (74%)
C2H2 Zn finger 1291..1311 CDD:275368 10/19 (53%)
zf-H2C2_2 1303..1328 CDD:290200 16/24 (67%)
C2H2 Zn finger 1319..1339 CDD:275368 15/19 (79%)
sall3aXP_005157904.1 PHA03169 <29..>190 CDD:223003 32/166 (19%)
COG5048 461..>787 CDD:227381 151/439 (34%)
C2H2 Zn finger 475..495 CDD:275368 16/19 (84%)
C2H2 Zn finger 503..523 CDD:275368 16/19 (84%)
C2H2 Zn finger 754..774 CDD:275368 15/19 (79%)
zf-H2C2_2 766..791 CDD:316026 21/24 (88%)
C2H2 Zn finger 782..802 CDD:275368 16/19 (84%)
zf-C2H2 812..834 CDD:306579 15/21 (71%)
C2H2 Zn finger 814..834 CDD:275368 14/19 (74%)
zf-C2H2 1135..1157 CDD:306579 10/24 (42%)
C2H2 Zn finger 1137..1157 CDD:275368 10/22 (45%)
zf-H2C2_2 1149..1174 CDD:316026 16/24 (67%)
C2H2 Zn finger 1165..1185 CDD:275368 15/19 (79%)
zf-C2H2 1165..1185 CDD:306579 15/19 (79%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 54 1.000 Domainoid score I11211
eggNOG 1 0.900 - - E1_KOG1074
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 428 1.000 Inparanoid score I1708
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D130294at33208
OrthoFinder 1 1.000 - - FOG0001008
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23233
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1943
SonicParanoid 1 1.000 - - X498
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 1 1.500 - -
1212.460

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