DRSC/TRiP Functional Genomics Resources

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Protein Alignment salm and yy1b

DIOPT Version :9

Sequence 1:NP_723670.2 Gene:salm / 34569 FlyBaseID:FBgn0261648 Length:1365 Species:Drosophila melanogaster
Sequence 2:XP_005170286.1 Gene:yy1b / 406394 ZFINID:ZDB-GENE-040426-2127 Length:365 Species:Danio rerio


Alignment Length:415 Identity:92/415 - (22%)
Similarity:154/415 - (37%) Gaps:130/415 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   561 QNLYRPPMEILKSLGAAAPHQYFPQELPTDLRKPSPQLDEDEPQ-VKNEPVEEKDQREEHEQEMA 624
            :.||      :::.|||.|.:..             :|.|.|.: ::...:..:|:.|:.|:...
Zfish     5 ETLY------IEAEGAAVPAELV-------------ELQEIEVETIETTVIGGEDEDEDEEEPAM 50

  Fly   625 ECSEP----EPEPLPLEVRIKEERVEEQEQVKQ---EDHRIEPRRTPSPSSEHRSPHHHRHSHMG 682
            ...:|    :.||..:.::.:||.|.|..:::.   |:..:.|..||...::          ::|
Zfish    51 IALQPLHTGDGEPGVILLQTREEVVGEDAELRGDAFEEQILIPVPTPGADAQ----------YIG 105

  Fly   683 YPPVVQPIQPAALMHPQSS--------------PGSQSHLDHLPTPG--------QLPPREDFFA 725
                    |....:..:||              .|.:|:|....:.|        |:...|..|:
Zfish   106 --------QTLLTVAGRSSGGRAGRRAAAGGKKTGKKSYLSAAESSGRKWEQKQVQIKTLEGEFS 162

  Fly   726 -------ERFPLNFTTAKMLSPEHHSPVRSP--AGGALPP-GVPPPPHHHPHHMAR--SPFFN-- 776
                   ::..|.....:.:..|:..|..|.  .|..||| |:|......|..:|.  |||.|  
Zfish   163 VTMWASDDKKELEHEVEEHIIGENSPPDYSEYMTGKKLPPGGIPGIDLSDPKQLAEFASPFSNSG 227

  Fly   777 ---------PIKHEMAALLPR----PHS------NDNSWENFIEVSNTCETMKLKELMKNKKISD 822
                     .||.:.|   ||    ||.      .|||                 .:.|:.....
Zfish   228 GQFSRMKPKKIKEDDA---PRTIACPHKGCSKMFRDNS-----------------AMRKHLHTHG 272

  Fly   823 P--NQCVVCDRVLSCKSALQMHYRTHTGERPFKCRI--CGRAFTTKGNLKTHMAVHKIRPPMRNF 883
            |  :.|..|.:.....|.|:.|...||||:||:|..  ||:.|:...||:||:.:|....|    
Zfish   273 PRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP---- 333

  Fly   884 HQCPV--CHKKYSNALVLQQHIRLH 906
            :.||.  |:||::.:..|:.||..|
Zfish   334 YVCPFDGCNKKFAQSTNLKSHILTH 358

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
salmNP_723670.2 zf-C2H2 451..473 CDD:278523
C2H2 Zn finger 453..473 CDD:275368
zf-H2C2_2 465..490 CDD:290200
C2H2 Zn finger 481..501 CDD:275368
C2H2 Zn finger 826..846 CDD:275368 5/19 (26%)
zf-H2C2_2 838..863 CDD:290200 12/26 (46%)
zf-C2H2_2 854..922 CDD:289522 19/57 (33%)
C2H2 Zn finger 854..874 CDD:275368 8/21 (38%)
C2H2 Zn finger 886..906 CDD:275368 8/21 (38%)
C2H2 Zn finger 1291..1311 CDD:275368
zf-H2C2_2 1303..1328 CDD:290200
C2H2 Zn finger 1319..1339 CDD:275368
yy1bXP_005170286.1 COG5048 <208..358 CDD:227381 47/173 (27%)
C2H2 Zn finger 249..271 CDD:275368 6/38 (16%)
zf-C2H2 276..298 CDD:278523 5/21 (24%)
C2H2 Zn finger 278..298 CDD:275368 5/19 (26%)
zf-H2C2_2 291..316 CDD:290200 11/24 (46%)
C2H2 Zn finger 306..328 CDD:275368 8/21 (38%)
zf-H2C2_2 320..347 CDD:290200 11/30 (37%)
C2H2 Zn finger 336..358 CDD:275368 8/21 (38%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1943
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.030

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