DRSC/TRiP Functional Genomics Resources

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Protein Alignment salm and yy1a

DIOPT Version :9

Sequence 1:NP_723670.2 Gene:salm / 34569 FlyBaseID:FBgn0261648 Length:1365 Species:Drosophila melanogaster
Sequence 2:NP_997782.1 Gene:yy1a / 322397 ZFINID:ZDB-GENE-030131-1117 Length:357 Species:Danio rerio


Alignment Length:358 Identity:77/358 - (21%)
Similarity:120/358 - (33%) Gaps:98/358 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   599 DEDEPQVKNEPVEEKDQREEHEQEM------------------AECSEPEPEPLPLEVRIKEERV 645
            ||.:|.:..:|:...|....:.||:                  |:.|..:...:|:.|.:.||..
Zfish    41 DEHQPMIALQPLVTDDPNHVNHQEVILVQTREEVVGCDDSDLHADDSFEDQILIPVPVPVAEEEY 105

  Fly   646 EEQEQVKQEDHRIEPRRTPSPSSEHRSPHHHRHSHMGYPPVVQPIQPAALMHPQSSPG----SQS 706
            .||..|                                  .|....|:..|......|    .:|
Zfish   106 IEQTLV----------------------------------TVSGKNPSGRMKKGGGSGKRVVKKS 136

  Fly   707 HLDHLPTPGQLPPREDFFAERFPLNFTTAKMLSP-----EHHSPV-------RSP-------AGG 752
            .|:.....|:...::....:.....|:.....|.     :|.:.|       .||       .|.
Zfish   137 FLNSAEASGRKWEQKQVQIKTLEGEFSVTMWASDDKKDVDHETVVEEQIIGENSPPDYSEYMTGK 201

  Fly   753 ALPP-GVPPPPHHHPHHMARSPFFNPIKHEMAALLPRPHSNDNSWENFIEVSNTCETM--KLKEL 814
            .||| |:|......|..:|          |.|.:.||....|:|..........|..|  ....:
Zfish   202 KLPPGGIPGIDLSDPKQLA----------EFARMKPRKIKEDDSPRTIACPHKGCTKMFRDNSAM 256

  Fly   815 MKNKKISDP--NQCVVCDRVLSCKSALQMHYRTHTGERPFKCRI--CGRAFTTKGNLKTHMAVHK 875
            .|:.....|  :.|..|.:.....|.|:.|...||||:||:|..  ||:.|:...||:||:.:|.
Zfish   257 RKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHT 321

  Fly   876 IRPPMRNFHQCPV--CHKKYSNALVLQQHIRLH 906
            ...|    :.||.  |:||::.:..|:.||..|
Zfish   322 GDRP----YVCPFDGCNKKFAQSTNLKSHILTH 350

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
salmNP_723670.2 zf-C2H2 451..473 CDD:278523
C2H2 Zn finger 453..473 CDD:275368
zf-H2C2_2 465..490 CDD:290200
C2H2 Zn finger 481..501 CDD:275368
C2H2 Zn finger 826..846 CDD:275368 5/19 (26%)
zf-H2C2_2 838..863 CDD:290200 12/26 (46%)
zf-C2H2_2 854..922 CDD:289522 19/57 (33%)
C2H2 Zn finger 854..874 CDD:275368 8/21 (38%)
C2H2 Zn finger 886..906 CDD:275368 8/21 (38%)
C2H2 Zn finger 1291..1311 CDD:275368
zf-H2C2_2 1303..1328 CDD:290200
C2H2 Zn finger 1319..1339 CDD:275368
yy1aNP_997782.1 COG5048 <211..350 CDD:227381 41/152 (27%)
C2H2 Zn finger 241..263 CDD:275368 3/21 (14%)
zf-C2H2 268..290 CDD:278523 5/21 (24%)
C2H2 Zn finger 270..290 CDD:275368 5/19 (26%)
zf-H2C2_2 283..308 CDD:290200 11/24 (46%)
C2H2 Zn finger 298..320 CDD:275368 8/21 (38%)
zf-H2C2_2 312..339 CDD:290200 11/30 (37%)
C2H2 Zn finger 328..350 CDD:275368 8/21 (38%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1943
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.030

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