DRSC/TRiP Functional Genomics Resources

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Protein Alignment salm and Sall1

DIOPT Version :10

Sequence 1:NP_723670.2 Gene:salm / 34569 FlyBaseID:FBgn0261648 Length:1365 Species:Drosophila melanogaster
Sequence 2:NP_001100885.2 Gene:Sall1 / 307740 RGDID:1309916 Length:1315 Species:Rattus norvegicus


Alignment Length:1424 Identity:370/1424 - (25%)
Similarity:556/1424 - (39%) Gaps:489/1424 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 KQLKDRARSADKDIGSDQEENGGCSPLTTATTTASPSRSPEPEEEQ-----------------PE 86
            ||.|.:...:|.::.|....:|.       |....|||..:.::..                 .:
  Rat     5 KQAKPQHFQSDPEVASLPRRDGD-------TEKGQPSRPTKSKDAHVCGRCCAEFFELSDLLLHK 62

  Fly    87 EQSTSEQSI------------------PEQSTPDHQLENDIKSEAKSEIEPVEDNNNRVAMTKPS 133
            :..|..|.:                  |..:.||.|::   ...:|::.|...|.:....:.:..
  Rat    63 KSCTKNQLVLIVNESPASPPKTFPPGPPSLNNPDEQMK---FVASKADQEDCGDLSEHKGLDREE 124

  Fly   134 SEERE-PNASGSMPSSPVAEASAEEAATERTPEKEKEKDVEVDVEKPDEAPSSAVPST-----EV 192
            |.|.| |.|:.|..|:....:|....||.             .........:||:.::     ::
  Rat   125 SMETEVPVATSSSSSNGGTLSSVTNIATP-------------SCHSGSSTGTSAITTSLPQLGDL 176

  Fly   193 TLPGG---AGAPVTLEAIQNMQMAIAQFAAKTIANGSNGADNEAAMKQLAFLQQTLFNLQQQQLF 254
            |..|.   ..:.|.:|.:|:.::|:|||:.:....|::|     ....::.|.:.|..|||||:.
  Rat   177 TTLGNFSVINSNVIIENLQSTKVAVAQFSQEARCGGASG-----GKLLISALMEQLLALQQQQIH 236

  Fly   255 QIQLIQQLQSQLALNQAKQEEDTEEDADQEQDQEQET-------DTYEEEERIADMELRQKAEAR 312
            |:|||:|::.|:.| .|.|..|....:...|...:.:       .::..::......|.|...::
  Rat   237 QLQLIEQIRHQILL-LASQNADLSASSVPSQGTLRTSANPLTTLSSHLSQQLAVAAGLAQSLASQ 300

  Fly   313 MAEAKARQHL-------INAGVPLRESSG-SP-------------AESLKRRREHDHESQPNRRP 356
            .|.....:.|       .::|..:..||| ||             :|.:.......|.|.|....
  Rat   301 SANISGVKQLPPVQLPQSSSGTIIPPSSGPSPNVSMVTATVPTPSSEKVASNAGASHVSPPAVSA 365

  Fly   357 SLDNTHKADTAQDALAKLKEMEN---------------TPLPFGSDLASSIITNHDDLPEPNSLD 406
            |      :..|..|::.|....:               ||||       :|.|..:||   |:|.
  Rat   366 S------SSPAAFAISSLLSPASNPLLPQPTPANAVFPTPLP-------NIATTAEDL---NALS 414

  Fly   407 LLQKRAQEVLDSASQGILANSMADDFAFGEKSGEGKGRNEPFFKHRCRYCGKVFGSDSALQIHIR 471
            .|.::.:....:.:            ||..||..    :|.||||:||:|.||||||||||||:|
  Rat   415 ALAQQRKSKPPNVT------------AFEAKSTS----DEAFFKHKCRFCAKVFGSDSALQIHLR 463

  Fly   472 SHTGERPFKCNVCGSRFTTKGNLKVHFQRHAQKFPHVPMNATPIPEHMDKFHPPLLDQMSPTDSS 536
            |||||||||||:||:||:||||||||||||.:|:||:.||..|:|||:|..         ||.:.
  Rat   464 SHTGERPFKCNICGNRFSTKGNLKVHFQRHKEKYPHIQMNPYPVPEHLDNV---------PTSTG 519

  Fly   537 PNHSPAPPPLGSAPASFPPAFPGLQNLYRPPM--EILKSLGAAAPHQYFPQELPTDLRKPSPQLD 599
                   .|.|   .|.||..|....|...|:  .:..|:|...|                |.|.
  Rat   520 -------IPYG---MSIPPEKPVTSWLDTKPVLPTLTTSVGLPLP----------------PTLP 558

  Fly   600 EDEPQVKNEPVEEKDQREEHEQEMAECSEPEPEPLPLEVRIKEERVEEQEQVKQEDHRIEPRRTP 664
            ...|.:|.|                     ||.|:|    |.......|..||.:        :.
  Rat   559 SLTPFIKTE---------------------EPAPIP----ISHSAASPQGSVKSD--------SG 590

  Fly   665 SPSSEHRSPHHHRHSHMGYPPVVQPIQPAALMHPQSSPGSQSH-LDHLPTPGQLPPREDFFAERF 728
            :|....|:|       .|.|...:    .:.:.|....|..|. :..:||.|             
  Rat   591 APDLATRNP-------SGVPEEAE----GSAVPPFGGKGEDSSVVSSIPTAG------------- 631

  Fly   729 PLNFTTAKMLSPEHHSPVRSPAGGALPPGVPPPPHHHPHHMARSPFFNPI----KHEMAALLPRP 789
                      |...:|||..  |||                ..:.|.||:    ..:..|..|  
  Rat   632 ----------SSALNSPVAD--GGA----------------GGTTFTNPLLPLMSEQFKAKFP-- 666

  Fly   790 HSNDNSWENFIEVSNTCETMKLKELMKN--KKISDPNQCVVCDRVLSCKSALQMHYRTHTGERPF 852
                  :...::.:...||.||::|::|  ||.:|||:||:|.|||||:|||:||||||||||||
  Rat   667 ------FGGLLDSAQASETSKLQQLVENIDKKATDPNECVICHRVLSCQSALKMHYRTHTGERPF 725

  Fly   853 KCRICGRAFTTKGNLKTHMAVHKIRPPMRNFHQCPVCHKKYSNALVLQQHIRLHTGEPTDLTPEQ 917
            ||:|||||||||||||||.:||:..||:|..|.||:|.||::||:|||||||:|.|.....||  
  Rat   726 KCKICGRAFTTKGNLKTHYSVHRAMPPLRVQHSCPICQKKFTNAVVLQQHIRMHMGGQIPNTP-- 788

  Fly   918 IQAAEIRDPPPSMMPGHFMNPFAAAAFHFGALPGGPGGPPGPNHGAHNGALGSESSQGDMDDNMD 982
                 :.|..|..|                                       ||..|..|:   
  Rat   789 -----VPDNYPESM---------------------------------------ESDTGSFDE--- 806

  Fly   983 CGEDYDDDVSSEHLSNSNLEQEGDRSRSGDDFKSLLFEQKLRIDATGVVNTNPVRPRSSASSHGH 1047
              :::||   .::.|:.|:|                                             
  Rat   807 --KNFDD---LDNFSDENME--------------------------------------------- 821

  Fly  1048 SVGSTSAPTSPSVHASSQVIKRSSSPARSEASQGALDLTPRAAPTSSSS-SRSPLPKEKPVSPPS 1111
                                         |..:|::..||::|..|..| |.||||.|.      
  Rat   822 -----------------------------ECPEGSIPDTPKSADASQDSLSSSPLPLEM------ 851

  Fly  1112 LPRSPSGSSHASANILTSPLPPTVGIDCLPPGLQHHLQQQHQHLMQQQAAVAAAAAAQHHHHQQM 1176
                   ||.|:                    |::.::..:..|.:|   :.|:..:..:...:.
  Rat   852 -------SSIAA--------------------LENQMKMINAGLAEQ---LQASLKSVENGSVEG 886

  Fly  1177 AALHQHQEQLRREAAEAQQKAAAAAAAAAAAAAAQRQTP----------PQARDQRQEGGPGA-- 1229
            ..|......:   ..:.:.:::.:.|.:.:.::.|..:|          |...::.|..|||.  
  Rat   887 DVLTNDSSSV---GGDVESQSSGSPAISESTSSMQALSPSNSTQEFHKSPNVEEKPQRVGPGEFA 948

  Fly  1230 -GPPPNPLMGARPPFGMFPNLPLFPPATTQNMCNAMNQIAQSVMPAAPFNPLALSGVRG---STT 1290
             |..|.|:.|..        |.|    |:.:....:.:.:..::  .||..      ||   :|.
  Rat   949 NGLSPTPVNGGA--------LDL----TSSHAEKIIKEDSLGIL--FPFRD------RGKFKNTA 993

  Fly  1291 CGICYKTFPCHSALEIHYRSHTKERPFKCSICDRGFTTKGNLKQHMLTHKIRDMEQETF 1349
            |.||.|||.|.|||:||||||||||||.|::|.|||:||||||||||||::||:..:.|
  Rat   994 CDICGKTFACQSALDIHYRSHTKERPFICTVCSRGFSTKGNLKQHMLTHQMRDLPSQLF 1052

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
salmNP_723670.2 SUF4-like 450..520 CDD:411020 54/69 (78%)
C2H2 Zn finger 453..474 CDD:411020 17/20 (85%)
C2H2 Zn finger 453..473 CDD:275368 16/19 (84%)
C2H2 Zn finger 481..501 CDD:411020 16/19 (84%)
C2H2 Zn finger 481..501 CDD:275368 16/19 (84%)
SUF4-like 826..>876 CDD:411020 42/49 (86%)
C2H2 Zn finger 826..847 CDD:411020 16/20 (80%)
C2H2 Zn finger 826..846 CDD:275368 15/19 (79%)
C2H2 Zn finger 854..874 CDD:411020 16/19 (84%)
C2H2 Zn finger 854..874 CDD:275368 16/19 (84%)
C2H2 Zn finger 886..906 CDD:275368 14/19 (74%)
SUF4-like 1291..>1341 CDD:411020 39/49 (80%)
C2H2 Zn finger 1291..1312 CDD:411020 15/20 (75%)
C2H2 Zn finger 1291..1311 CDD:275368 14/19 (74%)
zf-C2H2 1317..1339 CDD:395048 16/21 (76%)
C2H2 Zn finger 1319..1339 CDD:411020 15/19 (79%)
C2H2 Zn finger 1319..1339 CDD:275368 15/19 (79%)
Sall1NP_001100885.2 SUF4-like 442..529 CDD:411020 61/105 (58%)
C2H2 Zn finger 445..466 CDD:411020 17/20 (85%)
C2H2 Zn finger 445..465 CDD:275368 16/19 (84%)
C2H2 Zn finger 473..493 CDD:411020 16/19 (84%)
C2H2 Zn finger 473..493 CDD:275368 16/19 (84%)
C2H2 Zn finger 699..719 CDD:275368 15/19 (79%)
zf-H2C2_2 711..736 CDD:463886 22/24 (92%)
C2H2 Zn finger 727..747 CDD:275368 16/19 (84%)
zf-C2H2 757..779 CDD:395048 15/21 (71%)
C2H2 Zn finger 759..779 CDD:275368 14/19 (74%)
C2H2 Zn finger 994..1014 CDD:275370 14/19 (74%)
SUF4-like 997..>1041 CDD:411020 34/43 (79%)
C2H2 Zn finger 997..1015 CDD:411020 13/17 (76%)
zf-C2H2 1020..1042 CDD:395048 16/21 (76%)
C2H2 Zn finger 1022..1042 CDD:275370 15/19 (79%)
C2H2 Zn finger 1022..1041 CDD:411020 14/18 (78%)
lambda-1 1055..>1146 CDD:212564
SUF4-like 1125..>1172 CDD:411020
C2H2 Zn finger 1127..1148 CDD:411020
C2H2 Zn finger 1127..1147 CDD:275368
C2H2 Zn finger 1155..1175 CDD:275368
C2H2 Zn finger 1155..1172 CDD:411020
Blue background indicates that the domain is not in the aligned region.

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