DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment salm and Sall2

DIOPT Version :9

Sequence 1:NP_723670.2 Gene:salm / 34569 FlyBaseID:FBgn0261648 Length:1365 Species:Drosophila melanogaster
Sequence 2:NP_001100732.1 Gene:Sall2 / 305854 RGDID:1309272 Length:1004 Species:Rattus norvegicus


Alignment Length:1349 Identity:303/1349 - (22%)
Similarity:447/1349 - (33%) Gaps:535/1349 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    70 TTASPSRSPEPE-EEQPEEQSTSEQSIPEQST---PDHQLENDIKSEAKSEIEPVEDNNNRVAMT 130
            :.:|.|..|.|| ..:|:...|...::|:..:   ||....::.:.|..|       ....||.|
  Rat    73 SNSSVSSVPRPEGHSRPQVMDTEHSNLPDSGSSGPPDPAWGSERRGEESS-------GQFLVAGT 130

  Fly   131 KPSSEEREPNASGSMPSSPVAEASAEEAATERTPEKEKEKDVEVDVEKPDEAPSSAVPSTEVTLP 195
            ..::    ....|.:.:||...|         ||            ..|:..|:...|......|
  Rat   131 GTAA----GGGGGLILASPKLGA---------TP------------LPPESTPAPPPPPPPPPPP 170

  Fly   196 G-GAG---APVTLEAIQNMQMAIAQFAAKTIANGSNGADNEAAMKQLAFLQQTLFNLQQQQLFQI 256
            | |:|   .|:.||.::                                      .|||:|:.|:
  Rat   171 GVGSGHLNIPLILEELR--------------------------------------VLQQRQIHQM 197

  Fly   257 QLIQQLQSQLALNQAKQEEDTEEDADQEQDQEQETDTYEEEERIADMELRQKAEARMAE------ 315
            |:.:|:..|:.|                               :..:.....|.|..:|      
  Rat   198 QMTEQICRQVLL-------------------------------LGSLGQTVGAPASPSELPGTGT 231

  Fly   316 AKARQHLINAGVPLR-------------ESSGSPAESLKRRREHDHESQPNRRP----SLDNTHK 363
            |.:.:.|:....|::             .||.|.||..|:...|.:....::.|    .:..:||
  Rat   232 ASSTKPLLPLFSPIKPAQTGKTLASSSSSSSSSGAEPPKQAFFHLYHPLGSQHPFSVGGVGRSHK 296

  Fly   364 ADTAQDALAKLKEMENTPLPFGSDLASSIITNHDDLPEPNSLDLLQKR----AQEVLDSASQGIL 424
            ...|          .:..||..:|  ..|.:.|  |..|.:..||..:    |:.:..:||.|:|
  Rat   297 PTPA----------PSPALPGSTD--QLIASPH--LAFPGTTGLLAAQCLGAARGLEAAASPGLL 347

  Fly   425 ANSMADDFAFGEKSGEGK-GRNE-------PFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKC 481
            .          .|:|.|: |..|       |..:|:||:|.||||||||||||:||||||||:||
  Rat   348 K----------PKNGSGELGYGEVISSLEKPGGRHKCRFCAKVFGSDSALQIHLRSHTGERPYKC 402

  Fly   482 NVCGSRFTTKGNLKVHFQRHAQKFPHVPMNATPIPEHMDKFHPPLLDQMSPTDSSPNHSPAPPPL 546
            ||||:||||:|||||||.||.:|:|||.||..|:|||        ||.:..:...|.....||..
  Rat   403 NVCGNRFTTRGNLKVHFHRHREKYPHVQMNPHPVPEH--------LDYVITSSGLPYGMSVPPEK 459

  Fly   547 GSAPASFP-------PAFPGLQNLYRPPMEILKSLG---AAAPHQYFPQELPTDLR-------KP 594
            ....|:.|       |.......|.......|.|.|   |.||      .|||..:       :|
  Rat   460 AEEEAATPGGGVERKPLVASTTALSATESLTLLSTGTSTAVAP------GLPTFNKFVLMKAVEP 518

  Fly   595 SPQLDEDEPQVKNEPVEE-------KDQREEHEQEMAECSEPEPEPLPLEVRIKEERVEEQEQVK 652
            ..::||:.|     |..|       .|.......::::..                         
  Rat   519 KSKVDENTP-----PGSEGSAISGVADSGSATRMQLSKLV------------------------- 553

  Fly   653 QEDHRIEPRRTPSPSSEHRSPHHHRHSHMGYPPVVQPIQPAALMHPQSSPGSQSHLDHLPTPGQL 717
                      |..||....:.|........:|.|::|:        .:||...|.|..|      
  Rat   554 ----------TSLPSWALLTNHLKSTGSFPFPYVLEPL--------GASPSETSKLQQL------ 594

  Fly   718 PPREDFFAERFPLNFTTAKMLSPEHHSPVRSPAGGALPPGVPPPPHHHPHHMARSPFFNPIKHEM 782
                   .|:.......|          |.|.|.||.....|.|                     
  Rat   595 -------VEKIDRQGAVA----------VASTASGAPTTSAPAP--------------------- 621

  Fly   783 AALLPRPHSNDNSWENFIEVSNTCETMKLKELMKNKKISDPNQCVVCDRVLSCKSALQMHYRTHT 847
                                              :...|.|||||:|.|||||..||::||..|.
  Rat   622 ----------------------------------SSSASGPNQCVICLRVLSCPRALRLHYGQHG 652

  Fly   848 GERPFKCRICGRAFTTKGNLKTHMAVHKIRPPMRNFHQCPVCHKKYSNALVLQQHIRLHTG---- 908
            |||||||::|||||:|:|||:.|...||..|..|..:.||:|.||::||:.||||:|:|.|    
  Rat   653 GERPFKCKVCGRAFSTRGNLRAHFVGHKTSPAARAQNSCPICQKKFTNAVTLQQHVRMHLGGQIP 717

  Fly   909 EPTDLTPEQIQAAEIRDPPPSMMPGHFMNPFAAAAFHFGALPGGPGGPPGPNHGAHNGALGSESS 973
            ......||....|:......|                   ...|||..|.|.  |...:...|.|
  Rat   718 NGGSTLPEGGGVAQENSSEQS-------------------TASGPGSFPQPQ--AQQPSAEEEIS 761

  Fly   974 QGDMDDNMDCGEDYDDDVSSEHLSNSNLEQEGDRSRSGDDFKSLLFEQKLRIDATGVVNTNPVRP 1038
            :.:.:|     |:.::||:.|                                            
  Rat   762 EEEEED-----EEEEEDVTDE-------------------------------------------- 777

  Fly  1039 RSSASSHGHSVGSTSAPTSPSVHASSQVIKRSSSPARSEASQGALDLTPRAAPTSSSSSRSPLPK 1103
             .|.:..|...|...|   .||...|:.:    |.|..||:      |..||||:.         
  Rat   778 -DSLAGRGSESGGEKA---ISVRGDSEEV----SGAEEEAA------TSGAAPTNG--------- 819

  Fly  1104 EKPVSPPSLPRSPSGSSHASANILTSPLPPTVGIDCLPPGLQHHLQQQHQHL---MQQQAAVAAA 1165
                      :....:..|:...|..|.||...:|...|     ::|....:   |:::|.:...
  Rat   820 ----------KEVDNNEKATQQALPPPPPPPDNLDRPQP-----MEQGPSDVSGGMEEEAKLEGT 869

  Fly  1166 AAAQHHHHQQMAALHQHQEQLRREAAEAQQKAAAAAAAAAAAAAAQRQTPPQARDQRQEGGPGAG 1230
            ::       .||||.|..|                   ..:..:.:....|:|  .::|.|..: 
  Rat   870 SS-------PMAALPQEGE-------------------GTSTPSVEELNLPEA--MKKEPGESS- 905

  Fly  1231 PPPNPLMGARPPFGMFPNLPLFPPATTQNMCNAMNQIAQSVMPAAPFNPLALSGVRGSTTCGICY 1295
                                                                    ....|.:|.
  Rat   906 --------------------------------------------------------SRKACEVCG 914

  Fly  1296 KTFPCHSALEIHYRSHTKERP-FKCSICDRGFTTKGNLKQHMLT--HKI 1341
            ::||..:|||.|.::|.|:.| |.|..|.:||..:..||:|||.  |::
  Rat   915 QSFPTQTALEEHQKTHPKDGPLFTCVFCRQGFLDRATLKKHMLLAHHQV 963

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
salmNP_723670.2 zf-C2H2 451..473 CDD:278523 17/21 (81%)
C2H2 Zn finger 453..473 CDD:275368 16/19 (84%)
zf-H2C2_2 465..490 CDD:290200 21/24 (88%)
C2H2 Zn finger 481..501 CDD:275368 16/19 (84%)
C2H2 Zn finger 826..846 CDD:275368 12/19 (63%)
zf-H2C2_2 838..863 CDD:290200 17/24 (71%)
zf-C2H2_2 854..922 CDD:289522 31/71 (44%)
C2H2 Zn finger 854..874 CDD:275368 11/19 (58%)
C2H2 Zn finger 886..906 CDD:275368 12/19 (63%)
C2H2 Zn finger 1291..1311 CDD:275368 8/19 (42%)
zf-H2C2_2 1303..1328 CDD:290200 12/25 (48%)
C2H2 Zn finger 1319..1339 CDD:275368 9/21 (43%)
Sall2NP_001100732.1 C2H2 Zn finger 374..394 CDD:275368 16/19 (84%)
zf-H2C2_2 386..411 CDD:290200 21/24 (88%)
C2H2 Zn finger 402..422 CDD:275368 16/19 (84%)
C2H2 Zn finger 631..651 CDD:275368 12/19 (63%)
zf-H2C2_2 643..668 CDD:290200 17/24 (71%)
C2H2 Zn finger 659..679 CDD:275368 11/19 (58%)
zf-C2H2 690..711 CDD:278523 12/20 (60%)
C2H2 Zn finger 691..711 CDD:275368 12/19 (63%)
C2H2 Zn finger 910..930 CDD:275368 8/19 (42%)
zf-C2H2 910..930 CDD:278523 8/19 (42%)
C2H2 Zn finger 939..957 CDD:275368 7/17 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166340121
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1074
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D130294at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23233
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X498
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
98.810

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