DRSC/TRiP Functional Genomics Resources

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Protein Alignment salm and pqm-1

DIOPT Version :10

Sequence 1:NP_723670.2 Gene:salm / 34569 FlyBaseID:FBgn0261648 Length:1365 Species:Drosophila melanogaster
Sequence 2:NP_496391.1 Gene:pqm-1 / 174705 WormBaseID:WBGene00004096 Length:295 Species:Caenorhabditis elegans


Alignment Length:153 Identity:38/153 - (24%)
Similarity:67/153 - (43%) Gaps:24/153 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   379 NTPLPFGSDLASSIITNHDD-----LPEPNSLDLLQKRAQEVLDSASQGILANSMADDFAFGEKS 438
            |||     ::.:||....||     .|:....|||:..:.:..:......|.|:  .|.......
 Worm    86 NTP-----NVLASIANMGDDEGPSCNPKMRRGDLLKSVSMDSTEDPPSITLDNN--GDMIVPNND 143

  Fly   439 GEGKGRNEPFFK-----HRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHF 498
            .||..||:.:.:     :.|..|.||:|..:::..|:..:....|.||||...:|||:....:||
 Worm   144 KEGWCRNKKYIEQTENGYMCTVCRKVYGRYNSVSYHVTIYHRNPPIKCNVPNCQFTTREARYIHF 208

  Fly   499 QRHAQKFPHVPMNATPIPEHMDK 521
            .::.:       :..|:||.:|:
 Worm   209 HKNYR-------HGIPLPESIDQ 224

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
salmNP_723670.2 SUF4-like 450..520 CDD:411020 19/74 (26%)
C2H2 Zn finger 453..474 CDD:411020 6/20 (30%)
C2H2 Zn finger 453..473 CDD:275368 6/19 (32%)
C2H2 Zn finger 481..501 CDD:411020 8/19 (42%)
C2H2 Zn finger 481..501 CDD:275368 8/19 (42%)
SUF4-like 826..>876 CDD:411020
C2H2 Zn finger 826..847 CDD:411020
C2H2 Zn finger 826..846 CDD:275368
C2H2 Zn finger 854..874 CDD:411020
C2H2 Zn finger 854..874 CDD:275368
C2H2 Zn finger 886..906 CDD:275368
SUF4-like 1291..>1341 CDD:411020
C2H2 Zn finger 1291..1312 CDD:411020
C2H2 Zn finger 1291..1311 CDD:275368
zf-C2H2 1317..1339 CDD:395048
C2H2 Zn finger 1319..1339 CDD:411020
C2H2 Zn finger 1319..1339 CDD:275368
pqm-1NP_496391.1 None
Blue background indicates that the domain is not in the aligned region.

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