DRSC/TRiP Functional Genomics Resources

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Protein Alignment salm and sall1b

DIOPT Version :9

Sequence 1:NP_723670.2 Gene:salm / 34569 FlyBaseID:FBgn0261648 Length:1365 Species:Drosophila melanogaster
Sequence 2:XP_005163246.1 Gene:sall1b / 100149526 ZFINID:ZDB-GENE-020228-3 Length:1203 Species:Danio rerio


Alignment Length:1354 Identity:347/1354 - (25%)
Similarity:506/1354 - (37%) Gaps:495/1354 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    86 EEQSTSEQSIPEQS-------TPDHQLENDIKSE----AKSEIEPVEDNNNRVAMTKP--SSEER 137
            |...|.:..|.||.       |..:|.:.|...:    ..||.|.::...:.:.:..|  ::||.
Zfish    21 EPSPTCDVHICEQCCAEFSSITELYQHQKDCSKDQLVLIVSENESLDSPPSALTVNSPFFNTEEH 85

  Fly   138 EPNASGSMPSSPVAEASAEEAATERTPEKEKEKDV-EV-DVEKPDE---------APSSAVPS-- 189
            ....:.:..:..:.::|.|....    |.|:..|| |: .::|...         |.|:::|.  
Zfish    86 SDGVTNNDSTEDLGDSSNEGTLL----EVEEPLDVLEILGIDKKSNKCSNDGLSFAYSASLPQDI 146

  Fly   190 --TEVTLPGGAGAPVTLEAIQNMQMAIAQFAAKT-----IANGSNGADNEAAMKQLAFLQQTLFN 247
              .|:.......:.|.:|.::|.::|:|||:.:|     ..|.||     |....|..::| |..
Zfish   147 ALLELCKLSAINSNVFIENLENTKVAVAQFSQETPLKTSCINASN-----AKKVDLGLIEQ-LLA 205

  Fly   248 LQQQQLFQIQLIQQLQSQ---LALNQAKQEEDTEEDADQEQDQEQETDTYEEEERIADMELRQKA 309
            |||||:.|::||:::::|   ||...:|....|..:...:.....:..:...|:..|...|   |
Zfish   206 LQQQQMQQLKLIEEIRAQIMLLATQNSKTPLTTNSNGLSQTRSLIKLSSQLSEQLTAAAGL---A 267

  Fly   310 EARMAEAKARQHLINAGVPLRESSGSPAESLKRRREHDHESQPNRRPSL-----------DNTH- 362
            |...|.||...|:|    |..:      :.|:..:|....:...|..||           .:.| 
Zfish   268 ENLAANAKQSTHVI----PQNQ------DGLRGEKEDSKVTSKIRDDSLPMKLDIDQSGNQSLHD 322

  Fly   363 -KADTAQDALAKLKEMENTPLPFGSDLASSIITNHDDLP-EPNSLDLLQKRAQEVLDSASQGILA 425
             |.....|..|.||    ||.|   ..||..|.|..:|| :|||.:                |.|
Zfish   323 SKVTNKVDGGANLK----TPSP---SPASDGIVNKLELPHKPNSFN----------------ISA 364

  Fly   426 NSMADDFAFGEKSG-------------------EGKGRNEP-FFKHRCRYCGKVFGSDSALQIHI 470
            ||:....|..|...                   |.|..:|. .|||:||:|.||||||||||||:
Zfish   365 NSLPSIGAIVEDLNALTALAQHRKAKPVNVSLCEHKRPSEDCIFKHKCRFCAKVFGSDSALQIHL 429

  Fly   471 RSHTGERPFKCNVCGSRFTTKGNLKVHFQRHAQKFPHVPMNATPIPEHMDKFHPPLLDQMSPTDS 535
            ||||||||:|||:||:||:|:||||||||||.:|:|:|.||..|:|||:|               
Zfish   430 RSHTGERPYKCNICGNRFSTRGNLKVHFQRHKEKYPNVLMNPYPVPEHLD--------------- 479

  Fly   536 SPNHSPAPPPLGSAPASFPPAFPGLQNLYRPPMEILKSLGAAAPH-QYFPQELPTDLRKPSPQLD 599
                                             .:|.|.|  .|: ...|||.|     |...||
Zfish   480 ---------------------------------NVLTSTG--IPYGMSVPQEKP-----PLSWLD 504

  Fly   600 EDEPQVKNEPVEEKDQREEHEQEMAECSEPEPEPLPLEVRIKEERVEEQEQVKQEDHRIEPRRTP 664
             .:|.|.|.           ...|...|.|   .||:.::.:||.|.           |....:|
Zfish   505 -SKPLVGNS-----------IGFMLSSSLP---GLPVIIKKEEEGVS-----------ITKPHSP 543

  Fly   665 SPSSEHRSPHHHRHSHMGYPPVV---------QPIQPAALMHPQSSPGSQSHLDHLPTPGQLPPR 720
            ..|...:..:.|:...:..||::         |.:..:.|:. .|..||               |
Zfish   544 VVSELTKRINGHQEGFVCSPPIISNEKFQEVNQRLSVSTLLR-SSREGS---------------R 592

  Fly   721 EDFFAERFPLNFTTAKMLSPEHHSPVRSPAGGALPPGVPPPPHHHPHHMARSPFFNPIKHEMAAL 785
            ||.............|:.|.:..:....   |:||                    ||:       
Zfish   593 EDIAINTSVNTGLITKLKSEQLEAKFLL---GSLP--------------------NPL------- 627

  Fly   786 LPRPHSNDNSWENFIEVSNTCETMKLKELMKN--KKISDPNQCVVCDRVLSCKSALQMHYRTHTG 848
                              ...||.||::|::|  ||.:|||:|.:|.|||||:|||:||:|||||
Zfish   628 ------------------GASETAKLEQLVENIDKKYTDPNECGICHRVLSCQSALKMHFRTHTG 674

  Fly   849 ERPFKCRICGRAFTTKGNLKTHMAVHKIRPPMRNFHQCPVCHKKYSNALVLQQHIRLHTGEPTDL 913
            |||||||:||||||||||||||.::|:..||:|..:.||:|.:|::||:||||||.:|.|     
Zfish   675 ERPFKCRVCGRAFTTKGNLKTHYSIHRSMPPLRIQNSCPICQEKFTNAMVLQQHIHMHMG----- 734

  Fly   914 TPEQIQAAEIRDPPPSMMPGHFMNPFAAAAFHFGALPGGPGGPPGPNHGAHNGALGSESSQGDMD 978
                               ||.                       ||...|:.:  .|....|:.
Zfish   735 -------------------GHI-----------------------PNVPMHDSS--EELMDQDLV 755

  Fly   979 DNMDC--GEDYDDDVSSEHLSNSNLEQEGDRSRSGDDFKSLLFEQKLRIDATGVVNTNPVRPRSS 1041
            ::||.  .||.|....:..|.|.:...|.:.|...   .|:....:.:|..|.|.|         
Zfish   756 ESMDTFPNEDTDTMQGASDLKNPDSLTESECSSPA---SSVFARSESQIKVTNVEN--------- 808

  Fly  1042 ASSHGHSVGSTSAPTSPSVHASSQVIKRSSSPARSEASQGALDLTPRAAPTSSSSSRSPLPKEKP 1106
                              :..:|:::.:..|......:||.     .:......|.|..:|.|..
Zfish   809 ------------------LENTSKLVIQDGSIEGDCLTQGL-----ASQNIEHESLRRRIPSEST 850

  Fly  1107 VS-PPSLPR-----SPSGSSHASANILTSPLPPTVGIDCLPPGLQHHLQQQHQHLMQQQAAVAAA 1165
            .| .||.|:     .|..:...::|:..|.|     :|                           
Zfish   851 ASWSPSSPKGYTTIDPKSAESNNSNLTVSRL-----LD--------------------------- 883

  Fly  1166 AAAQHHHHQQMAALHQHQEQLRREAAEAQQKAAAAAAAAAAAAAAQRQTPPQARDQRQEGGPGAG 1230
                                                   .|:...|:.|...             
Zfish   884 ---------------------------------------GASGEVQKDTLTM------------- 896

  Fly  1231 PPPNPLMGARPPFGMFPNLPLFPPATTQNMCNAMNQIAQSVMPAAPFNPLALSGVRGSTTCGICY 1295
                          :||.:               ||                 |...|..|.||.
Zfish   897 --------------VFPYI---------------NQ-----------------GSLKSNVCDICN 915

  Fly  1296 KTFPCHSALEIHYRSHTKERPFKCSICDRGFTTKGNLKQHMLTHKIRDMEQETF 1349
            |.|.|.|||:||||||||||||.|:.|::||:||||||||||||::|::..:.|
Zfish   916 KMFACQSALDIHYRSHTKERPFICTACNKGFSTKGNLKQHMLTHQMRELPSQLF 969

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
salmNP_723670.2 zf-C2H2 451..473 CDD:278523 17/21 (81%)
C2H2 Zn finger 453..473 CDD:275368 16/19 (84%)
zf-H2C2_2 465..490 CDD:290200 20/24 (83%)
C2H2 Zn finger 481..501 CDD:275368 15/19 (79%)
C2H2 Zn finger 826..846 CDD:275368 13/19 (68%)
zf-H2C2_2 838..863 CDD:290200 21/24 (88%)
zf-C2H2_2 854..922 CDD:289522 34/67 (51%)
C2H2 Zn finger 854..874 CDD:275368 16/19 (84%)
C2H2 Zn finger 886..906 CDD:275368 12/19 (63%)
C2H2 Zn finger 1291..1311 CDD:275368 13/19 (68%)
zf-H2C2_2 1303..1328 CDD:290200 18/24 (75%)
C2H2 Zn finger 1319..1339 CDD:275368 14/19 (74%)
sall1bXP_005163246.1 C2H2 Zn finger 412..432 CDD:275368 16/19 (84%)
zf-H2C2_2 424..449 CDD:290200 20/24 (83%)
C2H2 Zn finger 440..460 CDD:275368 15/19 (79%)
COG5048 645..1071 CDD:227381 146/539 (27%)
C2H2 Zn finger 652..672 CDD:275368 13/19 (68%)
zf-H2C2_2 664..689 CDD:290200 21/24 (88%)
C2H2 Zn finger 680..700 CDD:275368 16/19 (84%)
C2H2 Zn finger 712..732 CDD:275368 12/19 (63%)
C2H2 Zn finger 911..931 CDD:275368 13/19 (68%)
zf-H2C2_2 923..948 CDD:290200 18/24 (75%)
C2H2 Zn finger 939..959 CDD:275368 14/19 (74%)
zf-C2H2 1036..1058 CDD:278523
C2H2 Zn finger 1038..1058 CDD:275368
zf-H2C2_2 1050..1075 CDD:290200
C2H2 Zn finger 1066..1086 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 50 1.000 Domainoid score I11649
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 428 1.000 Inparanoid score I1708
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D130294at33208
OrthoFinder 1 1.000 - - FOG0001008
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23233
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X498
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 1 1.500 - -
88.660

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