DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment salr and CMR3

DIOPT Version :9

Sequence 1:NP_001245983.1 Gene:salr / 34568 FlyBaseID:FBgn0000287 Length:1267 Species:Drosophila melanogaster
Sequence 2:NP_015338.1 Gene:CMR3 / 856123 SGDID:S000006217 Length:317 Species:Saccharomyces cerevisiae


Alignment Length:364 Identity:81/364 - (22%)
Similarity:134/364 - (36%) Gaps:90/364 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   299 QMQEEYSEYASKEAQSRGEIFKHRCKYCGKIFGSYSALQIHL--RSHTGERPFVCNVCGSKFTTK 361
            |..|:.|.|..|   ||..    ....|...:.|...||:..  :..||:        |::|  .
Yeast     8 QSSEKQSSYTDK---SRSP----NIGMCTVNYKSNLPLQVSAVDQLSTGK--------GTQF--Y 55

  Fly   362 GNLKVHYQRHTQIFPPMLLPP--GVAPNVGHSGQGQVQGEQYPIRLPFAPPVAPVGQEQHQ--NQ 422
            |:.....:|.......:.|||  .:.||..::....|..     |:.|.|      |:.:|  |.
Yeast    56 GHNSYKNERECYNSTKINLPPISSLLPNFENNTPPNVDS-----RVQFPP------QQVYQSMNV 109

  Fly   423 VEEPEEIRQEIPVPQAEDLSKPMVKEKEK--SHSPVERVKTPKEVKTDAALPSSEKP----EKEI 481
            |....||...|.:....|.......|.::  .||....:.:...:.....:|:..||    :|| 
Yeast   110 VPIVNEIYTPISMNATSDQYPIYYTESQQPIPHSQSPHLTSSAPLMMPVMVPTVYKPLTPYDKE- 173

  Fly   482 SKPVVTSSRRNGSVRKRQTSAVSPPQ------EDRERDLVEHLHIAKLVRRSSASR-ESQP---- 535
              |:..:|..|.:.    .|..|.|.      .||.:.:.....:...::.:|..| :|:|    
Yeast   174 --PITIASEPNFTA----ISMASHPNAALELCHDRPKSVPPGYGVLPTMQEASNGRTKSEPGAVL 232

  Fly   536 ---AEYSLAQMERIIDKSWEDLIEIDKTSETSKLQQLVDNIENKLTDPNQCIFCQKVMSCRSSLQ 597
               |.:|          .|    :.|....::||::             ||..|.|:.|..|:|:
Yeast   233 NGSATFS----------DW----KTDTRISSTKLRK-------------QCPVCGKICSRPSTLK 270

  Fly   598 MHIRTHTGERPFRC--KICGRAFATKGNLKAHMSIHKIK 634
            .|...|||:.||:|  :.|.::|..|.|:..|:..|:.|
Yeast   271 THYLIHTGDTPFKCTWEGCTKSFNVKSNMLRHLKSHERK 309

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
salrNP_001245983.1 zf-C2H2 321..343 CDD:278523 4/23 (17%)
C2H2 Zn finger 323..343 CDD:275368 4/21 (19%)
zf-H2C2_2 335..360 CDD:290200 6/26 (23%)
C2H2 Zn finger 351..371 CDD:275368 3/19 (16%)
C2H2 Zn finger 583..603 CDD:275368 7/19 (37%)
zf-H2C2_2 595..620 CDD:290200 10/26 (38%)
C2H2 Zn finger 611..631 CDD:275368 6/21 (29%)
C2H2 Zn finger 643..663 CDD:275368
lambda-1 1013..>1061 CDD:212564
zf-C2H2 1040..1062 CDD:278523
C2H2 Zn finger 1042..1062 CDD:275368
zf-H2C2_2 1054..1079 CDD:290200
C2H2 Zn finger 1070..1090 CDD:275368
CMR3NP_015338.1 COG5048 17..316 CDD:227381 77/355 (22%)
C2H2 Zn finger 256..276 CDD:275370 7/19 (37%)
C2H2 Zn finger 284..306 CDD:275370 6/21 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR23233
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

Return to query results.
Submit another query.