DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment salr and sall4

DIOPT Version :10

Sequence 1:NP_523548.1 Gene:salr / 34568 FlyBaseID:FBgn0000287 Length:1267 Species:Drosophila melanogaster
Sequence 2:NP_001001458.1 Gene:sall4 / 407860 XenbaseID:XB-GENE-485252 Length:1067 Species:Xenopus tropicalis


Alignment Length:1177 Identity:328/1177 - (27%)
Similarity:492/1177 - (41%) Gaps:329/1177 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 AEAVPESDTERETAEERGEEQEPENSNEALDLSLISSGGRESLP-------GSGHVS-------- 114
            |||.|......:..:.:.....||...|.:|      ..::::|       |.|:||        
 Frog    98 AEAEPLEVPTVDNVQPKSSSVSPEKMEEKVD------SAKKTVPQSTPKTNGLGYVSKTKLSNTN 156

  Fly   115 --LEALQHTKVAVAQFAATAMAGNHQSAD-LAMVQSTIFNVQRQHLMQLQLIQHLQSQLKR---- 172
              |:.:..|||||.|.||..:|.:..:.: :.|:...:..:|:|.|.|:||.:.::.|:..    
 Frog   157 VTLQTINSTKVAVNQHAADGVATSQSNPNAIPMILEQLVCLQQQQLQQIQLTEQIRIQIAMMAPN 221

  Fly   173 ------AEAA----ALGRHSHSDEEEEEPEPEPEPKKQPTNGLK-EELELEQGPESEQDQESRRE 226
                  |.|.    |||.|.   .::.........:|..|..|. |.|:..:.|.|.....:   
 Frog   222 SLHPSIAAATDPLKALGAHL---SQQLSAAVALIGQKAGTQSLSLESLKQSKLPHSTVAMPT--- 280

  Fly   227 ENSKTDKRGTEDRKAEPEGYQSMMCDISSSLASSIITNHDPPPA-PNEPNCLEMLQRRTEEVLDS 290
                   .||     .|....:.:.....||..|......|.|| |:.|.  .::.:.....||.
 Frog   281 -------AGT-----VPLALTTSLLKQEPSLGLSTAVGRFPNPALPHSPG--TVIFQNPINALDP 331

  Fly   291 ASQSLHAAQMQEEYSEYASKEAQSRGE--IFKHRCKYCGKIFGSYSALQIHLRSHTGERPFVCNV 353
            :.      :::.::....:.|.:..||  .|:|:||:|||:||:.|||||||||||||||:.||:
 Frog   332 SK------KLKGKFPSVTTPETKPGGEDQFFRHKCKFCGKVFGNDSALQIHLRSHTGERPYKCNI 390

  Fly   354 CGSKFTTKGNLKVHYQRHTQIFPPMLLPPGVAPNVGHSGQGQVQGEQYPIRLPFAPPVAPVGQEQ 418
            ||::||||||||||:|||...:|.:.:.|                  ||:             .:
 Frog   391 CGNRFTTKGNLKVHFQRHKDKYPHIKMNP------------------YPV-------------PE 424

  Fly   419 HQNQVEEPEEIRQEIPVPQAEDLSKPMVKEKEKSHSPVERVKTPKEVKTDAALPSSEKPEKEISK 483
            |.:.|.....|...:.||.  |.|..:|..|    |.|            |.||::.. ...:::
 Frog   425 HLDNVPTTSGIPYGMSVPL--DESNVIVDTK----SGV------------AGLPNATN-LSSLTE 470

  Fly   484 PVVTSSRRNGSVRKRQTSAVSPPQEDRERDLVEHLHIAKLVRRSSA--SRESQPAEYSLAQMERI 546
            .|:      |:......|..||..|.      |.:....:.:.|..  |..|.|...|..|    
 Frog   471 TVL------GAFPLNMQSRPSPGSEG------ESVSSGAVGQESGTDQSLNSPPVSGSSEQ---- 519

  Fly   547 IDKSWEDLIEIDKTSETSKLQQLVDNIENKLTDPNQCIFCQKVMSCRSSLQMHIRTHTGERPFRC 611
                         .|||:||||||:|::...::.|:|:.|.:|:||.|||:||.|||||||||:|
 Frog   520 -------------GSETTKLQQLVENLDKNGSETNECLICHRVLSCPSSLKMHYRTHTGERPFKC 571

  Fly   612 KICGRAFATKGNLKAHMSIHKIKPPMRSQFKCPVCHQKFSNGIILQQHIRIHTMDDGSGGQ--GA 674
            |||||||:||.|||.|..:|:...|::.|..||:|.:||:|.::||||||:|     .|||  ..
 Frog   572 KICGRAFSTKSNLKTHYGVHRANTPLKLQHSCPICQKKFTNAVVLQQHIRMH-----MGGQIPNT 631

  Fly   675 PAANPGEAERLGIEDQNSNKSLGTSDTLDFSTTISDHSGQRSESSQGGDFDEFMTMDSTDD--SR 737
            |..          ||        .||.||..:.:.:.:|:.:.|....:.|:   :|..||  :.
 Frog   632 PVT----------ED--------ASDDLDIDSMMDEKNGELNNSFTDENPDD---IDMEDDELAE 675

  Fly   738 DNSSAATATPHPLERERDREKERERRIPNDCSDERSHS--NPDLTG-GRSESGEMP-AMDL---- 794
            :.|.:...|||                    |:.|:.|  .|..:| |:.....:| |::|    
 Frog   676 NASGSKPPTPH--------------------SETRAESPAMPFSSGTGQDNQVALPSALNLQRQN 720

  Fly   795 SSPSSNSGRIFATGLANGAAGGGSGNGGLPMLGMPMPPNLLLMAAAREEMHALGHAHAKFPLLPF 859
            |..||.:|.:.:.||.|.::..|                        ::.:..|.:..:.....|
 Frog   721 SVKSSENGSLESDGLTNDSSSVG------------------------DQEYPNGKSPTQSEARTF 761

  Fly   860 GPLGFMGLHPPPNVCNLCFKMLPSLAALESHLQSEHAKEPATGHAQRPQCSDAGSPYGAKLTLNP 924
            .|.....       .::..|..||...|:.           .|...:.:.|..||       |||
 Frog   762 SPTNSQS-------DSIASKSPPSYNGLDD-----------IGLLSKDEHSQNGS-------LNP 801

  Fly   925 NLFAKKPPSSSSSSSGEKLPESSNPPFPAENPPATPIKEDPDQEQLMVEEGASAGEGSGTGATSN 989
            :              |:...:.:|..|..:      |||:|...|              .|....
 Frog   802 D--------------GDGALDLTNGGFTRK------IKEEPGLLQ--------------NGELGR 832

  Fly   990 YPQEAGDAEQSLMKMQLHAHRFPASPLDFQQALMSAGPPTSS--LDPPV------NNKHFCHVCR 1046
            .|.....|..:|:||::.:.|...       |....|||..|  |.|.:      ..:|.||.|.
 Frog   833 SPNMYVGAPPALIKMEVSSDRMAG-------AAQFLGPPNLSPGLTPLIVPQRRSAKQHICHTCG 890

  Fly  1047 RNFSSSSALQIHMRTHTGDKPFQCNVCQKAFTTKGNLKVHMGTHMWTNPTSRRGRRMSL--ELPM 1109
            :||||:||||||.|||||:|||.|.:|.:|||||||||||:|||||.| ::|||||:|:  ::|.
 Frog   891 KNFSSASALQIHERTHTGEKPFACTICGRAFTTKGNLKVHVGTHMWNN-SARRGRRLSVDNQIPA 954

  Fly  1110 RPGPNSGQGHPGSSAEQ--EFMQR---------RPELFFPYLPPFFNGLPPKPGELSPGAFPNIP 1163
            .          |:.|::  |...:         .|.::..|.....|||..|..|:|......:|
 Frog   955 L----------GTDAKKVAEIFPKFIVPPTVSIDPTMWNQYATALSNGLALKTNEISVIQNSAVP 1009

  Fly  1164 PPPFANG 1170
            ..|.:||
 Frog  1010 ALPVSNG 1016

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
salrNP_523548.1 SUF4-like 320..>371 CDD:411020 38/50 (76%)
C2H2 Zn finger 323..344 CDD:411020 16/20 (80%)
C2H2 Zn finger 323..343 CDD:275368 15/19 (79%)
C2H2 Zn finger 351..371 CDD:411020 15/19 (79%)
C2H2 Zn finger 351..371 CDD:275368 15/19 (79%)
SUF4-like 583..>636 CDD:411020 34/52 (65%)
C2H2 Zn finger 583..604 CDD:411020 12/20 (60%)
C2H2 Zn finger 583..603 CDD:275368 11/19 (58%)
zf-H2C2_2 595..620 CDD:463886 21/24 (88%)
C2H2 Zn finger 611..631 CDD:411020 14/19 (74%)
C2H2 Zn finger 611..631 CDD:275368 14/19 (74%)
C2H2 Zn finger 643..663 CDD:275368 12/19 (63%)
lambda-1 1013..>1061 CDD:212564 21/55 (38%)
SUF4-like 1039..>1087 CDD:411020 34/47 (72%)
C2H2 Zn finger 1042..1063 CDD:411020 15/20 (75%)
C2H2 Zn finger 1042..1062 CDD:275368 14/19 (74%)
C2H2 Zn finger 1070..1090 CDD:275368 14/19 (74%)
C2H2 Zn finger 1070..1087 CDD:411020 12/16 (75%)
sall4NP_001001458.1 SUF4-like 357..439 CDD:411020 47/112 (42%)
C2H2 Zn finger 360..381 CDD:411020 16/20 (80%)
C2H2 Zn finger 360..380 CDD:275368 15/19 (79%)
C2H2 Zn finger 388..408 CDD:411020 15/19 (79%)
C2H2 Zn finger 388..408 CDD:275368 15/19 (79%)
C2H2 Zn finger 543..563 CDD:275368 11/19 (58%)
zf-H2C2_2 555..580 CDD:463886 21/24 (88%)
C2H2 Zn finger 571..591 CDD:275368 14/19 (74%)
zf-C2H2 601..623 CDD:395048 12/21 (57%)
C2H2 Zn finger 603..623 CDD:275368 12/19 (63%)
SUF4-like 884..>931 CDD:411020 34/46 (74%)
C2H2 Zn finger 886..907 CDD:411020 15/20 (75%)
C2H2 Zn finger 886..906 CDD:275368 14/19 (74%)
C2H2 Zn finger 914..934 CDD:275368 14/19 (74%)
C2H2 Zn finger 914..931 CDD:411020 12/16 (75%)

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