DRSC/TRiP Functional Genomics Resources

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Protein Alignment salr and Zfp236

DIOPT Version :9

Sequence 1:NP_001245983.1 Gene:salr / 34568 FlyBaseID:FBgn0000287 Length:1267 Species:Drosophila melanogaster
Sequence 2:NP_001361158.1 Gene:Zfp236 / 329002 MGIID:1926950 Length:1847 Species:Mus musculus


Alignment Length:1179 Identity:254/1179 - (21%)
Similarity:413/1179 - (35%) Gaps:325/1179 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    76 ETAEERGEEQEPENSNEALDLSLISSGGRESLPGSGHVSLEALQHTKVAVAQFAATAMAGNHQSA 140
            |.|::..:.||..:.::  |.::.......:.|....:....||.|...||             |
Mouse   768 ELAQQLQQHQEASSMDD--DSTVDQQSMHVAAPMPVEIESAELQQTPETVA-------------A 817

  Fly   141 DLAMVQSTIFNVQRQHLMQLQ---LIQHLQSQLKRAE-----AAALGRHSHSDEEEEEPEPEPEP 197
            |    ..:|..:..||::..:   |.|.|..|...|:     |:......|.|:.||:..|:|. 
Mouse   818 D----PESILELGPQHVVGTEDAALGQQLADQPLEADEDGFTASQAPLPGHMDQFEEQGTPQPS- 877

  Fly   198 KKQPTNGLKEELELEQG---PESEQDQESRREENSKTDKRGTEDRKAEPEGYQSMMCDISSSLAS 259
                    .|...|.||   .::...|.|........|....|.:......:|..:..:.:|.|.
Mouse   878 --------FESAGLPQGFTVTDTYSQQTSFPPVQQLQDSSTLESQALSTSFHQQNLLQVPNSDAI 934

  Fly   260 SIITNHDPPPAPNEPNCLEMLQRRTEEVLDSASQSLHAAQMQEEYSEYASKEAQSRGEIFKHRCK 324
            ::.|              .:|...::|.||..:|   ..|..|:      .|.|||.   .:||.
Mouse   935 NVAT--------------RLLPESSQEDLDLQTQ---GPQFLED------SEDQSRR---SYRCD 973

  Fly   325 YCGKIFGSYSALQIHLRSHTGERPFVCNVCGSKFTTKGNLKVHYQRHTQI--FPPMLLPPGVAPN 387
            ||.|.|...|.|:.|:||||||:|:.|.:||..|.:.|.||.|.:.||.:  |...:.......|
Mouse   974 YCNKGFKKSSHLKQHVRSHTGEKPYKCKLCGRAFVSSGVLKSHEKTHTGVKAFSCSICNASFTTN 1038

  Fly   388 VGHSGQGQVQGEQYPIRLPFAPPVAPVGQEQHQNQVEEPEEIRQEIPVPQAEDLSKPMVKEKEKS 452
            ...:..........|.:.||.       :|..:..|    ..|:.:...||...:.....|.|..
Mouse  1039 GSLTRHMATHMSMKPYKCPFC-------EEGFRTAV----HCRKHMKRHQAVSSAAAAAAETEGG 1092

  Fly   453 HSPVERVKTPKEVKTDAALPSSEKPEKEISKPVVTSSRRNGSVRKRQTSAVSPP---QEDRERDL 514
            .:.||.    .|..:|.:  :|.||..|:.......:.:...::.::::.||..   |...|:|.
Mouse  1093 DTCVEE----DEENSDRS--ASRKPRPEVITFTEEETAQLAKIQPQESATVSEKVLVQSAAEKDR 1151

  Fly   515 VEHLHIAKLVRRSSASRESQPAEYSLAQMERIIDKSWE---DLIEIDKTSETSKLQQLVDNIENK 576
            :..:      :...|..|::|..   |.......||::   ||:...:.....|           
Mouse  1152 ISEM------KDKQAELEAEPKH---ANCCTYCPKSFKKPSDLVRHVRIHTGEK----------- 1196

  Fly   577 LTDPNQCIFCQKVMSCRSSLQMHIRTHTGERPFRCKICGRAFATKGNLKAHMSIHKIKPPMRSQF 641
               |.:|..|.|..:.:|:|..|::||||::.|.|.:|..||:|||:||.||.:|....|    |
Mouse  1197 ---PYKCDECGKSFTVKSTLDCHVKTHTGQKLFSCHVCSNAFSTKGSLKVHMRLHTGAKP----F 1254

  Fly   642 KCPVCHQKFSNGIILQQHIRIHTMDDGSGGQGAPAANPGEAERLGIEDQNSNKSLGTSDTLDFST 706
            |||.|..:|......:.|::.|...|           |.:|.:  ...::|::||.:.:.|:.|:
Mouse  1255 KCPHCELRFRTSGRRKTHMQFHYKSD-----------PKKARK--PVTRSSSESLQSVNLLNSSS 1306

  Fly   707 T-----ISDHS---GQRSES----------------SQGGDFDEFMTMDSTDDSRDNSSAATATP 747
            |     |.::|   ||..::                |.|||    :|:..||     .|.||...
Mouse  1307 TDPNVFIMNNSVLTGQFDQNVLQPGLVGQAILPASVSAGGD----LTVSLTD-----GSLATLEG 1362

  Fly   748 HPLERERDREKERERRIPNDCSDERS---HSNPDLTGGRSESGEMPAMDLSSPSSNSGRIFATGL 809
            ..|:...:......:....|.|...:   ..:|.:.....:.|.:.|..::..||.:        
Mouse  1363 IQLQLAANLVGPNVQISGIDASSINNITLQIDPSILQQTLQQGSLLAQPITGESSTA-------- 1419

  Fly   810 ANGAAGGGSGNGGLPMLGMPMPPNLLLMAAAREEMHALGHAHAKFPLLPFGPLGFMGLHPPPNVC 874
                    |.|..|......:|.::::.                       ||..:.|.|.....
Mouse  1420 --------SQNSSLQTSDSTVPASVVIQ-----------------------PLSGLSLQPTVTSA 1453

  Fly   875 NLCFKMLPSLAALESHLQSEHAKEPATGHAQRPQ--CSDAGSPYGAKLTLNPNLF------AKKP 931
            ||   .:..|:..:|.|.:..:...........|  .|.:..|:...||:|.:..      |..|
Mouse  1454 NL---TIGPLSEQDSVLTTSSSGSQDLSQVMTSQGLVSTSTGPHEITLTINNSSLSQVLAQAAGP 1515

  Fly   932 PSSSSSSSGEKL--------PESSNPPFPAENPPAT----------------------------- 959
            .:||||.|.:::        |.|.:.|..|...|:.                             
Mouse  1516 TASSSSGSPQEITLTISELNPSSGSLPSTAPMSPSAISAQNLVMSSSGVGADASVTLTLADTQGV 1580

  Fly   960 ----------PIKEDPDQEQLMVEEGASAGEGSGTGA-----TSNYPQEAGDAEQSL------MK 1003
                      .|.....|...::.:.:.:|:| |.|:     .|:.||.:..|.:.:      :.
Mouse  1581 LSGGLDTVTLNITSQGQQFPALLTDPSLSGQG-GAGSPQVILVSHTPQSSSAAGEEIAYQVTDVP 1644

  Fly  1004 MQLHAHRFPASP------LDFQQALMS-------------------------------------- 1024
            .||..|..|...      ||..:|..|                                      
Mouse  1645 AQLTPHSQPEKEGLSHQCLDCDRAFSSAAVLMHHSKEVHGKERIHGCRVCRKAFKRATHLKEHML 1709

  Fly  1025 ---AGPPTSSLDPPVNNKHFCHVCRRNFSSSSALQIHMRTHTGDKPFQCNVCQKAFTTKGNLKVH 1086
               |||..||..|.|..   |..|.:.|:..|.|:.|.|.|||::||.|.:|.|||..|..|:||
Mouse  1710 THQAGPSLSSQKPRVFK---CDSCEKAFAKPSQLERHSRIHTGERPFHCTLCDKAFNQKSALQVH 1771

  Fly  1087 MGTHMWTNP 1095
            :..|....|
Mouse  1772 LKKHTGERP 1780

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
salrNP_001245983.1 zf-C2H2 321..343 CDD:278523 10/21 (48%)
C2H2 Zn finger 323..343 CDD:275368 9/19 (47%)
zf-H2C2_2 335..360 CDD:290200 13/24 (54%)
C2H2 Zn finger 351..371 CDD:275368 8/19 (42%)
C2H2 Zn finger 583..603 CDD:275368 6/19 (32%)
zf-H2C2_2 595..620 CDD:290200 11/24 (46%)
C2H2 Zn finger 611..631 CDD:275368 11/19 (58%)
C2H2 Zn finger 643..663 CDD:275368 5/19 (26%)
lambda-1 1013..>1061 CDD:212564 17/94 (18%)
zf-C2H2 1040..1062 CDD:278523 7/21 (33%)
C2H2 Zn finger 1042..1062 CDD:275368 7/19 (37%)
zf-H2C2_2 1054..1079 CDD:290200 13/24 (54%)
C2H2 Zn finger 1070..1090 CDD:275368 9/19 (47%)
Zfp236NP_001361158.1 COG5048 <30..234 CDD:227381
C2H2 Zn finger 41..61 CDD:275368
C2H2 Zn finger 70..90 CDD:275368
C2H2 Zn finger 97..117 CDD:275368
C2H2 Zn finger 125..145 CDD:275368
C2H2 Zn finger 157..177 CDD:275368
COG5048 197..>550 CDD:227381
C2H2 Zn finger 201..221 CDD:275368
C2H2 Zn finger 229..249 CDD:275368
C2H2 Zn finger 257..278 CDD:275368
C2H2 Zn finger 289..310 CDD:275368
C2H2 Zn finger 486..506 CDD:275368
C2H2 Zn finger 514..534 CDD:275368
C2H2 Zn finger 542..562 CDD:275368
zf-H2C2_2 554..579 CDD:372612
C2H2 Zn finger 570..590 CDD:275368
COG5048 653..1058 CDD:227381 80/343 (23%)
C2H2 Zn finger 661..681 CDD:275368
C2H2 Zn finger 689..709 CDD:275368
C2H2 Zn finger 717..737 CDD:275368
C2H2 Zn finger 745..765 CDD:275368
COG5048 937..1317 CDD:227381 115/462 (25%)
C2H2 Zn finger 972..992 CDD:275368 9/19 (47%)
C2H2 Zn finger 1000..1020 CDD:275368 8/19 (42%)
C2H2 Zn finger 1028..1048 CDD:275368 1/19 (5%)
C2H2 Zn finger 1172..1192 CDD:275368 4/19 (21%)
C2H2 Zn finger 1200..1220 CDD:275368 6/19 (32%)
C2H2 Zn finger 1228..1248 CDD:275368 11/19 (58%)
C2H2 Zn finger 1256..1276 CDD:275370 5/19 (26%)
Herpes_BLLF1 <1374..1675 CDD:282904 56/343 (16%)
C2H2 Zn finger 1662..1683 CDD:275368 4/20 (20%)
C2H2 Zn finger 1691..1711 CDD:275368 0/19 (0%)
C2H2 Zn finger 1727..1747 CDD:275368 7/19 (37%)
zf-H2C2_2 1740..1764 CDD:372612 13/23 (57%)
C2H2 Zn finger 1755..1775 CDD:275368 9/19 (47%)
zf-H2C2_2 1767..1792 CDD:372612 5/14 (36%)
C2H2 Zn finger 1783..1801 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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