DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment salr and peb

DIOPT Version :10

Sequence 1:NP_523548.1 Gene:salr / 34568 FlyBaseID:FBgn0000287 Length:1267 Species:Drosophila melanogaster
Sequence 2:NP_476674.3 Gene:peb / 31391 FlyBaseID:FBgn0003053 Length:1894 Species:Drosophila melanogaster


Alignment Length:1048 Identity:227/1048 - (21%)
Similarity:335/1048 - (31%) Gaps:393/1048 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   416 QEQHQNQVEEPEEIRQEIPVPQAEDLSKPMVKEKEKSHSPVERV---KTPKEVKTDAALPSSEKP 477
            |:||.|...|.|..||.              ::...|.|.:|.:   :|||::..::....:...
  Fly     5 QQQHNNSTVESEMERQR--------------RDSTTSESSLEHLDLGRTPKKLGGNSGSTQTTST 55

  Fly   478 EKEISKPVVTSSRRNGSVRKRQTSAVSPPQEDRERDLVEHLHIAKL------------------- 523
            ..|::  .|||||:. .:|..|.:.....|..::.||:....:|:.                   
  Fly    56 PHELA--TVTSSRKR-KIRHLQLNHHQQQQHHQQSDLLSDEDVAEAEAEEDEDEEDGDQVAALGS 117

  Fly   524 -------VRRS--SASRESQPAEYSLAQMERI-----IDKSWEDLIE---IDKTSETSKLQQL-- 569
                   .|||  :.::.|...:||......:     :::|...|.|   :|.:|.|.....|  
  Fly   118 RNLGRHKQRRSGGATTQASIVMDYSSGDASSLRKKFRLNRSAASLSESGFVDASSTTGHSGYLGN 182

  Fly   570 ----------------------------------------------------------------- 569
                                                                             
  Fly   183 SSSATNTTATSGIGASAVAPSPVGGAAINAASSSSGSSSGGSGGSSPQGQCLSSGESGIGAGDEH 247

  Fly   570 -----------------------VDNIENKLTDPNQCIFCQKVMSCRSSLQMHIRTHTGERPFRC 611
                                   ..|..|..|:...|..|.||:|..|||..|:..|||||||.|
  Fly   248 MKYLCPICEVVSATPHEFTNHIRCHNYANGDTENFTCRICSKVLSSASSLDRHVLVHTGERPFNC 312

  Fly   612 KICGRAFATKGNLKAHMSIHK----IKPPMRSQFKCPVCHQKFSNGIILQQHIRIHTMDDGSGGQ 672
            :.|...|.|.||:..||..||    .:...:||.:..:..|:.|     ||..|.......|..|
  Fly   313 RYCHLTFTTNGNMHRHMRTHKQHQVAQSQSQSQQQQSLQQQQQS-----QQQRRQQQQHQPSQQQ 372

  Fly   673 GAPAANPGEAERLG------IEDQNSNKSLGTSDTLDFSTTISDHSGQRSESSQGGDFDEFMTMD 731
                .||.:.:.:|      .|...|:.|..|    |.|   |.||..||.|             
  Fly   373 ----QNPAQQQLMGNTLSARAESYESDASCST----DVS---SGHSHSRSSS------------- 413

  Fly   732 STDDSRDNSSAATATPHPLE------RERDREKERERRIPNDCSDE--RSHSNPDLTGGRSESGE 788
            |.:::.:||..|......||      .::|.| .::||:....::.  .|....|:....::..:
  Fly   414 SLNNNNNNSHKANNNLKDLEELEVSTEDQDTE-NKQRRLKTTINNNIIESEQQEDMDDEEADDAD 477

  Fly   789 MPAMDLSSPSSNSGRIFATGLANGAAGGGSGNGGLPMLGMPMPPNLLLMAAAREEMHALGHAHAK 853
            : ||..|:|.      .||.||..:|.|.:.....|   .|.....||::               
  Fly   478 V-AMLTSTPD------VATLLAGASASGAASRSPTP---SPSASPALLLS--------------- 517

  Fly   854 FPLLPFGPLGFMGLHPPPNVCNLC----FKMLPSLAALESHLQSEHAKEPATGHAQRPQCSDAGS 914
                                |..|    |:.||:|..   ||.:.|:..||       :|.|...
  Fly   518 --------------------CPACGASDFETLPALCV---HLDAMHSDIPA-------KCRDCEV 552

  Fly   915 PYGAKLTLN------PNLFA-KKPPSSSSSSSGEKLPESSNPPFPAENPPATPIKEDPDQEQLMV 972
            .:.....|.      ||..| ..||...:|||          |...|.|......:|.|.||  .
  Fly   553 IFATHRQLQSHCCRLPNALAGGLPPLLGASSS----------PLHNEEPEDEEHGDDEDLEQ--K 605

  Fly   973 EEGASAGE------------GSGTGATSNYP----QEAGDAE-----QSLMKMQLHAHRFPASPL 1016
            |..||..|            .:|.||.|:.|    .|..|.:     ||::.|...:..|..   
  Fly   606 ERLASQSEDFFHQLYLKHKTANGCGAISHPPSPIKHEPADTKDLADIQSILNMTSSSSSFLR--- 667

  Fly  1017 DFQQALMSAGPPTSSLD----------------------------------PPV------NNKHF 1041
            :|:|::.:......|||                                  |.:      |..|.
  Fly   668 NFEQSVNTPNSSQYSLDGRDQEEEAQDAFTSEFRRMKLRGEFPCKLCTAVFPNLRALKGHNRVHL 732

  Fly  1042 ----------CHVCRRNFSSSSALQIHMRTHTGDKPFQCNVCQKAFTTKGNLKVHM-GTHMWTNP 1095
                      |::|.......:||..|||||.||:|::|.||..|||||.|.:.|: ..|   ..
  Fly   733 GAVGPAGPFRCNMCPYAVCDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRH---GK 794

  Fly  1096 TSRRGRRMSLELPMRPGPNSGQGHPGSSAEQEFMQRRPELFFPYLPPFFNGLPPKPGE-LSPGAF 1159
            |||...:.::..           ||...|..|..:.|                  .|| |:..:|
  Fly   795 TSREEVKRAIVY-----------HPAEDAGCEDSKSR------------------LGEDLADTSF 830

  Fly  1160 PNI---PPPPFANGGKYPYPPGLLGFPGFLA---QHPYI------LERRSSSKSPTPEPAQSPAL 1212
            .:|   ||||..|..|......||| ...||   |.|.:      |::....|...|.|.|....
  Fly   831 RSISPTPPPPPVNESKSQLKHMLLG-ENHLAPVNQQPPLKIQVKSLDQLVDKKPSAPAPQQQQQQ 894

  Fly  1213 REEEGSGN 1220
            :::|.||:
  Fly   895 QQQEKSGS 902

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
salrNP_523548.1 SUF4-like 320..>371 CDD:411020
C2H2 Zn finger 323..344 CDD:411020
C2H2 Zn finger 323..343 CDD:275368
C2H2 Zn finger 351..371 CDD:411020
C2H2 Zn finger 351..371 CDD:275368
SUF4-like 583..>636 CDD:411020 26/56 (46%)
C2H2 Zn finger 583..604 CDD:411020 9/20 (45%)
C2H2 Zn finger 583..603 CDD:275368 9/19 (47%)
zf-H2C2_2 595..620 CDD:463886 13/24 (54%)
C2H2 Zn finger 611..631 CDD:411020 8/19 (42%)
C2H2 Zn finger 611..631 CDD:275368 8/19 (42%)
C2H2 Zn finger 643..663 CDD:275368 5/19 (26%)
lambda-1 1013..>1061 CDD:212564 14/97 (14%)
SUF4-like 1039..>1087 CDD:411020 22/57 (39%)
C2H2 Zn finger 1042..1063 CDD:411020 8/20 (40%)
C2H2 Zn finger 1042..1062 CDD:275368 7/19 (37%)
C2H2 Zn finger 1070..1090 CDD:275368 10/20 (50%)
C2H2 Zn finger 1070..1087 CDD:411020 9/16 (56%)
pebNP_476674.3 C2H2 Zn finger 252..272 CDD:275368 0/19 (0%)
C2H2 Zn finger 284..304 CDD:275368 9/19 (47%)
zf-H2C2_2 296..321 CDD:463886 13/24 (54%)
C2H2 Zn finger 312..332 CDD:275368 8/19 (42%)
C2H2 Zn finger 711..731 CDD:275368 2/19 (11%)
C2H2 Zn finger 743..763 CDD:275368 7/19 (37%)
zf-H2C2_2 755..780 CDD:463886 15/24 (63%)
C2H2 Zn finger 771..789 CDD:275368 10/17 (59%)
C2H2 Zn finger 1453..1473 CDD:275370
zf-H2C2_2 1465..1490 CDD:463886
C2H2 Zn finger 1481..1502 CDD:275370
C2H2 Zn finger 1706..1726 CDD:275368
zf-H2C2_2 1718..1742 CDD:463886
C2H2 Zn finger 1734..1754 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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