DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment salr and sem-4

DIOPT Version :10

Sequence 1:NP_523548.1 Gene:salr / 34568 FlyBaseID:FBgn0000287 Length:1267 Species:Drosophila melanogaster
Sequence 2:NP_491997.1 Gene:sem-4 / 172435 WormBaseID:WBGene00004773 Length:744 Species:Caenorhabditis elegans


Alignment Length:1080 Identity:253/1080 - (23%)
Similarity:351/1080 - (32%) Gaps:444/1080 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly   223 SRREENSKTDKRGTEDRKAEP-----EGYQSMMCDISSSLA-----SSIITNHDPPPAPNEPNCL 277
            |||:::......|..|....|     :.:....|:..:..|     .|.|..|...|..|....|
 Worm    13 SRRKQSKPRRMSGEGDAMMSPIDLSTKSFDENNCEKGAGGALPLEDRSNILPHFSVPFANPQQFL 77

  Fly   278 EMLQRRTEEVLDSASQSLHAAQMQEEYSEYASKEAQSRGEIFKHRC--KYCGKIFGSYSALQIH- 339
            .:                 .||:....|...|..|.:...     |  :.|.:.|.|.:||..| 
 Worm    78 SL-----------------CAQLGNSSSRNVSSTASTTSS-----CPIQSCSQSFSSPAALTWHV 120

  Fly   340 LRSHTGERP-FVCNVCGSKFTTKGNLKVH------YQRHTQIFPPMLLPPGV-------APNVGH 390
            |.:|..|:. |.|:||.:.|:...:::.|      ..|.|.: ||..:|..|       .|.:..
 Worm   121 LDAHEDEQEIFSCDVCTTTFSNGQDIREHKCQKTLASRSTSV-PPSTIPSSVCFLSTPTTPCLQF 184

  Fly   391 S-----GQGQVQGEQYPIRLPFAPPVAPVGQEQHQNQVEEPEEIRQEI---PVPQAEDLSKPMVK 447
            |     |..:::.|                .|:....||:.|.:..::   .:.:::|.|| |..
 Worm   185 SINESIGTSEIREE----------------DEEEDMDVEDGEHVANQLFGHLLQKSDDKSK-MAS 232

  Fly   448 EKEKSHSPVERVKTPKEVKTDAALPSSEKPEKEISKPVVTSSRRNGSVRKRQTSAVSPPQEDRER 512
            ....:..|.            ||.|:...|                 ...||..       |...
 Worm   233 LFNHAFPPF------------AAFPNMPPP-----------------FLMRQPF-------DPRA 261

  Fly   513 DLVEHLHIAKLVRRSSASRESQPAEYSLAQMERIIDKSWEDLIEIDKTSETSKLQQLVDNIENKL 577
            |:.            :|.|...             |..||.|:||..:.|..|::.||.:.....
 Worm   262 DVF------------AAGRHDN-------------DDDWEALMEISTSDEAEKIRALVGDKAVPT 301

  Fly   578 TDPNQCIFCQKVMSCRSSLQMHIRTHTGERPFRCKICGRAFATKGNLKAHMSIHKIK-------- 634
            |||||||.|::|:||:|:||||.|||||||||:||||.|||.||||||.||.:|:.|        
 Worm   302 TDPNQCILCRRVLSCKSALQMHYRTHTGERPFKCKICQRAFTTKGNLKTHMGVHRSKHSFRGLPI 366

  Fly   635 --PPMRSQFKCPVCHQKFSNGIILQQHIRIHTMDDGSGGQGAPAANPGEAERLGIEDQNSNKSLG 697
              ||     :....|| ..:.|...|.|.||.....:....|..|....:::..|..|       
 Worm   367 SLPP-----QLAAMHQ-HQHQIAPPQRIHIHNPPTSAASAAAAVAQIQASQQCPICQQ------- 418

  Fly   698 TSDTLDFSTTISDHSGQRSESSQGGDFDEFMTMDSTDDSRDNSSAATATPHPLERERDREKERER 762
                                        .|:            :|.....|..|           
 Worm   419 ----------------------------RFL------------NAGELAVHITE----------- 432

  Fly   763 RIPNDCSDERSHSNPDLTGGRSESGEMPAMDLSSPSSNSGRIFATGLANGAAGGGSGNGGLPMLG 827
                       |.|                .|:.|                          |.: 
 Worm   433 -----------HRN----------------SLTQP--------------------------PRV- 443

  Fly   828 MPMPPNLLLMAAAREEMHALGHAHAKFPLLPFGPLGFMGLHPPPNVCNLCFKMLPSLAA------ 886
            ||.|....:..               ||.:||                  |...|||.|      
 Worm   444 MPTPTTTRVQT---------------FPFVPF------------------FTTPPSLNATDMSTQ 475

  Fly   887 ------LESHLQSEHAKEPATGHAQRPQCSDAGSPYGAKLTLN--PNLFAKKPPSSSSSSSG--- 940
                  |.:.|:::.:....|...:.            |:|.:  |.:.:..|.:||.|||.   
 Worm   476 FNLANILSAQLKNDSSPNTDTSSVEE------------KITRDDPPKMASLSPSNSSDSSSSVRQ 528

  Fly   941 ---------EKLPESSNPPFPAENPPATPIKEDPDQEQLMVEEGASAGEGSGTGATSNYPQEAGD 996
                     |||.:...||...:....||   :|..|                            
 Worm   529 DILESSEFEEKLKKLEEPPILEQQVSTTP---NPKNE---------------------------- 562

  Fly   997 AEQSLMKMQLHAHRFPASPLDFQQALMSAGPPTSSLDPPVNNKHFCHVCRRNFSSSSALQIHMRT 1061
                             :||...|.:.:...|......||.:||.|.||.::|||||||||||||
 Worm   563 -----------------NPLLAMQKMWAETEPPPPRQMPVLSKHQCGVCFKHFSSSSALQIHMRT 610

  Fly  1062 HTGDKPFQCNVCQKAFTTKGNLKVHMGTHMWTNPTSRRGRRMSLELPMRPGPNSGQGHPGSSAEQ 1126
            |||||||:|::|.:||||:||||||||||.|....||||||:.              ...||..:
 Worm   611 HTGDKPFKCDMCGRAFTTRGNLKVHMGTHSWQQSPSRRGRRIF--------------DVASSVTE 661

  Fly  1127 EFMQRRPELFFPYLPPFFNGLPPKPGELSPGAFPNIPPPPFANGGKYPYPPGLLGF--------- 1182
                 :|.|..|.||.  :|        :|||      .|.|..|    |.||.|.         
 Worm   662 -----KPMLQSPILPT--SG--------APGA------SPLAMLG----PNGLSGLEMMMMLWRT 701

  Fly  1183 -----------PGFLAQHPYILERRSSSKSPTPEPAQSPA 1211
                       |..|.||  :.|..::..|..|.|..|.|
 Worm   702 VCSVCQKVCQSPNELEQH--LKEHLNNGSSAAPTPLASAA 739

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
salrNP_523548.1 SUF4-like 320..>371 CDD:411020 16/60 (27%)
C2H2 Zn finger 323..344 CDD:411020 8/23 (35%)
C2H2 Zn finger 323..343 CDD:275368 8/22 (36%)
C2H2 Zn finger 351..371 CDD:411020 5/25 (20%)
C2H2 Zn finger 351..371 CDD:275368 5/25 (20%)
SUF4-like 583..>636 CDD:411020 37/62 (60%)
C2H2 Zn finger 583..604 CDD:411020 13/20 (65%)
C2H2 Zn finger 583..603 CDD:275368 12/19 (63%)
zf-H2C2_2 595..620 CDD:463886 20/24 (83%)
C2H2 Zn finger 611..631 CDD:411020 15/19 (79%)
C2H2 Zn finger 611..631 CDD:275368 15/19 (79%)
C2H2 Zn finger 643..663 CDD:275368 5/19 (26%)
lambda-1 1013..>1061 CDD:212564 22/47 (47%)
SUF4-like 1039..>1087 CDD:411020 36/47 (77%)
C2H2 Zn finger 1042..1063 CDD:411020 16/20 (80%)
C2H2 Zn finger 1042..1062 CDD:275368 15/19 (79%)
C2H2 Zn finger 1070..1090 CDD:275368 14/19 (74%)
C2H2 Zn finger 1070..1087 CDD:411020 11/16 (69%)
sem-4NP_491997.1 C2H2 Zn finger 307..327 CDD:275368 12/19 (63%)
zf-H2C2_2 319..344 CDD:463886 20/24 (83%)
C2H2 Zn finger 335..355 CDD:275368 15/19 (79%)
lambda-1 553..>610 CDD:212564 26/104 (25%)
zf-C2H2 589..611 CDD:395048 16/21 (76%)
C2H2 Zn finger 591..611 CDD:275368 15/19 (79%)
zf-H2C2_2 603..628 CDD:463886 19/24 (79%)
C2H2 Zn finger 619..639 CDD:275368 14/19 (74%)

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