DRSC/TRiP Functional Genomics Resources

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Protein Alignment ab and chinmo

DIOPT Version :9

Sequence 1:NP_476562.1 Gene:ab / 34560 FlyBaseID:FBgn0264442 Length:904 Species:Drosophila melanogaster
Sequence 2:NP_001188680.1 Gene:chinmo / 33343 FlyBaseID:FBgn0086758 Length:840 Species:Drosophila melanogaster


Alignment Length:940 Identity:202/940 - (21%)
Similarity:309/940 - (32%) Gaps:301/940 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    75 QQHYALKWNDFQSSILSSFRHLRDEEDFVDVTLACDERSFTAHKVVLSACSPYFRRLLKANP--- 136
            ||.:.||||.|.|::..:|.:|...:...||.|:||...|.|||::|:|||..|..|.:..|   
  Fly     4 QQQFCLKWNSFSSNLAITFSNLFKSDLLADVILSCDGVVFKAHKLILAACSKKFADLFENTPTNG 68

  Fly   137 -CEHPIVILRDVRCDDVENLLSFMYNGEVNVSHEQLPDFLKTAHLLQIRGLADVNGGYPYSKA-- 198
             |   ::||.....|::..||.|||.|||:||.|.|..|||:|..||::||:...|.....:|  
  Fly    69 QC---VIILEATTPDNMAALLEFMYKGEVHVSQEALNSFLKSAESLQVKGLSTETGRLAAQQAQQ 130

  Fly   199 -------LSAALSHNSSNNNNNNSSSN-----------------NSLSNNNNNNN---------- 229
                   |.:.....|..|:.:..||:                 ||:|.....|.          
  Fly   131 HMGDLSPLDSPTGRRSVRNSLSGGSSSIVPGGVGIGLGGGATGANSMSGMGIGNGLSLAGMAAGG 195

  Fly   230 ------NNAESSNHNKISSYLSPNQTSAACNNSSNSNSNNHSSSHNNSSSNNISGSLNSSLNSPF 288
                  |.|.||.....:|....::..:|..|..:.::.....||:..:.|. ||::....|...
  Fly   196 GMAAAANAAASSLSTLAASANIVDRCGSAGANIISGSAAGIGGSHSGGAGNG-SGTVGIGGNGVG 259

  Fly   289 SAPQIPPPVTASSAAAAAAAAASLTAAVAAAAAATAASAGSSSSAASGQTSGTPAIQEL------ 347
            |......|::..|.|.||......|..:.....:.....|||||:..|.|...|..:.:      
  Fly   260 SGGGNNGPISLGSGAGAAHHLGGSTGILKQECDSLMHPGGSSSSSGMGYTHVPPIYRPINYEPPR 324

  Fly   348 -----------------------KASSAASPVRNPNP--NPSKASSSNHWDMGEMEGSRKSHLTP 387
                                   |:|...||:..| |  .||.::||                |.
  Fly   325 KRAIVRSPYSEQEQRGSVLRDGSKSSECPSPINKP-PYHRPSSSASS----------------TA 372

  Fly   388 PPQKRIKSADLFRAQHGISPERLLLDREFP--VAGQHPLT----------RNRSGRDTSKDRERN 440
            |.:     ||...::.. ||:....:...|  .||....|          ||....:.:.|.:| 
  Fly   373 PTE-----ADTMHSERA-SPQSSRYENHSPSTTAGNGNATSSLERIVKSERNNGSANEANDDDR- 430

  Fly   441 LELRESLLGQALENSNGQQANPKHELGQSAGEDSNSSDTEPSDRGDG-QHDGTLDGIDNQRSHSF 504
             ||.:.......|:...:..|.|:  ......:||:|.|.|:...:. :.||||.  .|..:...
  Fly   431 -ELMDESTDNGAEDLRVKLENLKY--SPPPPPNSNTSSTTPNTLLENLKADGTLS--SNLAASIA 490

  Fly   505 PNAFLGLQGIPGLLPGPSGINSDFVSRRSLEMRVRATDPR--PCPKCGKIYRSAHTLRTHLEDKH 567
            |...|.:..               .::.:.:..|...|.:  .|..|.::|.....||.|:..:|
  Fly   491 PADMLNVWN---------------ATKMNNKNSVNTADGKKLKCLYCDRLYGYETNLRAHIRQRH 540

  Fly   568 TVCPGYR--CVLCGTVAKSRNSLHSHMSRQHR---GISTKDLPVLPMPSAFDPELASRLLAKAGV 627
               .|.|  |..|.......|::..|::|:|:   |::                        ||.
  Fly   541 ---QGIRVPCPFCERTFTRNNTVRRHIAREHKQEIGLA------------------------AGA 578

  Fly   628 KISPAELRARA-------------SPTGGSGSSG------------------------------- 648
            .|:||.|.|.|             || ..:.::.                               
  Fly   579 TIAPAHLAAAAAASAAATAAASNHSPXEAAATAAASVVMNANKEAAKQRKRKTLKMALEKCMQRR 643

  Fly   649 ---------GGGGGGSSQAKLDLSNASGGPMDDAEDSDDDPEDLTTGNGLYGMGGSSSDLSRYHE 704
                     |.||.|:.         :||...:|.|.....|         |.|...::...|.:
  Fly   644 DAMVAETTTGAGGDGAE---------AGGESGEAVDGAGSEE---------GAGSEGTEPLTYEQ 690

  Fly   705 SLLSNFGHARMRNE-----AAAVAATAAALGQPKDLGVQLPNSNAPGQSLLDTYLQFITENTFGM 764
            .      ..||..|     .||:||..||......:..          ::..|.....|.||.|.
  Fly   691 Q------QQRMHQELTQQIRAAMAAEQAAEAMDSTMNT----------TVNTTTTTTTTTNTTGA 739

  Fly   765 ---GMSQEQAAAAALRAKMAQLNAMGHSLDNLPPGLLPGQFDLSKLAAGNPA------------- 813
               |.|..:|:..:.|.....        ::.||...||    |:|....|.             
  Fly   740 TSDGCSDAEASDGSDRPMEVD--------EDQPPEPQPG----SELVVVEPKIEVLSESEDEEDR 792

  Fly   814 --FGQSGPGLTIEPIMRHEQAAGNLSPNRP 841
              ..::.|.:..|.|..|       .||.|
  Fly   793 LHMSEAEPDIQAEAIYDH-------MPNTP 815

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
abNP_476562.1 BTB 93..189 CDD:279045 42/99 (42%)
BTB 104..189 CDD:197585 40/88 (45%)
zf-Di19 545..597 CDD:283297 14/53 (26%)
C2H2 Zn finger 546..567 CDD:275371 6/20 (30%)
C2H2 Zn finger 575..596 CDD:275371 5/20 (25%)
chinmoNP_001188680.1 BTB 22..116 CDD:279045 40/96 (42%)
BTB 33..116 CDD:197585 38/85 (45%)
C2H2 Zn finger 519..540 CDD:275368 6/20 (30%)
C2H2 Zn finger 547..568 CDD:275368 5/20 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 68 1.000 Domainoid score I9675
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1229475at2759
OrthoFinder 1 1.000 - - FOG0000141
OrthoInspector 1 1.000 - - otm40394
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23110
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
66.020

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