DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ca-beta and Cacnb2

DIOPT Version :9

Sequence 1:NP_001260375.1 Gene:Ca-beta / 34557 FlyBaseID:FBgn0259822 Length:844 Species:Drosophila melanogaster
Sequence 2:NP_075605.1 Gene:Cacnb2 / 12296 MGIID:894644 Length:655 Species:Mus musculus


Alignment Length:630 Identity:324/630 - (51%)
Similarity:392/630 - (62%) Gaps:117/630 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 ASSSDAPSVQGGQHRESRF--GLGYPSYQSGYNKLFTQGSADSNYSQPS-SDLSLDEEKESLRRE 66
            |.:..|.|...|..|::||  ..|..|..:..|....||||||..|:|| ||:||:|::|::|||
Mouse    30 AGALGAQSYGKGARRKNRFKGSDGSTSSDTTSNSFVRQGSADSYTSRPSDSDVSLEEDREAVRRE 94

  Fly    67 KERQALSQLDKARSKPVAFAVRTNVAYDGAIDDDSPVQGGAVSFEIREFLHIKEKYDNNWWIGRL 131
            .||||.:||:||::|||||||||||.|..|.:||.||.|.|:|||.::|||:|||::|:||||||
Mouse    95 AERQAQAQLEKAKTKPVAFAVRTNVRYSAAQEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRL 159

  Fly   132 VKEGCDVGFIPSPAKLDNIRMQNQTR--PSRLYGTK--GSSSGNLGAGGQAGAEP-SRGSTPPTP 191
            |||||::||||||.||:|:|:|::.|  ..:.|.:|  |:||.:||     ...| ||.||||:.
Mouse   160 VKEGCEIGFIPSPVKLENMRLQHEQRAKQGKFYSSKSGGNSSSSLG-----DIVPSSRKSTPPSS 219

  Fly   192 GDESDSMG--------PGRHGKTPAAAAN-------KEKRKPFFKKQETASPYDVVPSMRPVVLV 241
            ..:.|:.|        |..| ::|..:||       ||||.|||||.|...||||||||||||||
Mouse   220 AIDIDATGLDAEENDIPANH-RSPKPSANSVTSPHSKEKRMPFFKKTEHTPPYDVVPSMRPVVLV 283

  Fly   242 GPSLKGYEVTDMMQKALFDFLKHRFEGRIIITRVMADISLAKRSIMNNPSKRAIMERSSSRSDCL 306
            |||||||||||||||||||||||||||||.||||.|||||||||::|||||.||:|||::||. |
Mouse   284 GPSLKGYEVTDMMQKALFDFLKHRFEGRISITRVTADISLAKRSVLNNPSKHAIIERSNTRSS-L 347

  Fly   307 GKVQEEIERIFELARSLQLVVLDCDTINHPSQLAKTSLAPTIVYLKISSSKVLQRLIKSRGKSQA 371
            .:||.||||||||||:|||||||.||||||:||:||||||.|||:||||.|||||||||||||||
Mouse   348 AEVQSEIERIFELARTLQLVVLDADTINHPAQLSKTSLAPIIVYVKISSPKVLQRLIKSRGKSQA 412

  Fly   372 KNLSVQMVAAEKLAQCPP-DMFDVILDENQLEDACEHIAEYLETYWKATHPDIRAVP-------- 427
            |:|:||||||:||||||| :.||||||||||||||||:|:|||.|||||||....:|        
Mouse   413 KHLNVQMVAADKLAQCPPQESFDVILDENQLEDACEHLADYLEAYWKATHPPSGNLPNPLLSRTL 477

  Fly   428 -----PIARPLPQEASPSAD---PARLGPTPPVDGEE---------------FVDEQDPRMGMSG 469
                 |::..|...:..|..   |.|..|......||               ....|:.|.|...
Mouse   478 ASSTLPLSPTLASNSQGSQGDQRPDRSAPRSASQAEEEPCLEPVKKSQHRSSSATHQNHRSGTGR 542

  Fly   470 G-------DREGSRERD--------------------------------------RDSRERERER 489
            |       |.|....||                                      |:||.|.|:.
Mouse   543 GLSRQETFDSETQESRDSAYVEPKEDYSHEHVDRYVPHREHNHREETHSSNGHRHRESRHRSRDM 607

  Fly   490 ERERDYWDREFNRDRS---SKDRERDLEWE-----RERAREWERE 526
            .|::|:  .|..:.||   ||||..|.|.|     |..|.||.|:
Mouse   608 GRDQDH--NECIKQRSRHKSKDRYCDKEGEVISKRRNEAGEWNRD 650

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ca-betaNP_001260375.1 VGCC_beta4Aa_N 41..81 CDD:288872 25/40 (63%)
SH3_CACNB 85..146 CDD:212797 42/60 (70%)
Guanylate_kin 234..415 CDD:279019 153/181 (85%)
NK 244..416 CDD:302627 143/172 (83%)
Cacnb2NP_075605.1 VGCC_beta4Aa_N 68..109 CDD:288872 25/40 (63%)
SH3_CACNB2 108..176 CDD:212973 47/67 (70%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 186..257 22/76 (29%)
Guanylate_kin 276..457 CDD:279019 153/181 (85%)
NK 286..458 CDD:302627 143/172 (83%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 483..631 30/149 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..21
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 35..97 27/61 (44%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167836458
Domainoid 1 1.000 296 1.000 Domainoid score I1467
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 527 1.000 Inparanoid score I1221
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000994
OrthoInspector 1 1.000 - - otm42550
orthoMCL 1 0.900 - - OOG6_105007
Panther 1 1.100 - - LDO PTHR11824
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3437
SonicParanoid 1 1.000 - - X1029
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1211.920

Return to query results.
Submit another query.