DRSC/TRiP Functional Genomics Resources

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Protein Alignment hgo and HGO

DIOPT Version :9

Sequence 1:NP_523544.2 Gene:hgo / 34552 FlyBaseID:FBgn0040211 Length:439 Species:Drosophila melanogaster
Sequence 2:NP_200219.1 Gene:HGO / 835494 AraportID:AT5G54080 Length:461 Species:Arabidopsis thaliana


Alignment Length:444 Identity:251/444 - (56%)
Similarity:307/444 - (69%) Gaps:21/444 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSEYKYLSGFGSHFSSEDERYPNSLPVGQNSPQVCPYKLYAEQLSGSAFTAPRTENMRTWLYRKL 65
            :.|.||.||||:||||  |....:||:.||||.:|||.|||||:||::||:||..|.|:||||..
plant     8 LEELKYQSGFGNHFSS--EAIAGALPLDQNSPLLCPYGLYAEQISGTSFTSPRKLNQRSWLYRVK 70

  Fly    66 PSAAHLPFQPFKGA------EYFSQNWDEQPPNPNQLRWKPFDLPPKDGKNVNFVEGLHTVCGAG 124
            ||..|.||:|...|      |:.:.|   ...||.||||:|.|:|..:   ::||:||.|:||||
plant    71 PSVTHEPFKPRVPAHKKLVSEFDASN---SRTNPTQLRWRPEDIPDSE---IDFVDGLFTICGAG 129

  Fly   125 DPRSRHGLAIHIYSCNGSMDNSAFYNSDGDFLIVPQQGVLDITTEFGRMSVAPNEICVIPQGIRF 189
            ....|||.|||:|..|..|.:|||.|:|||||:|||.|.|.|.||.||:.|.|.||.|||||.||
plant   130 SSFLRHGFAIHMYVANTGMKDSAFCNADGDFLLVPQTGRLWIETECGRLLVTPGEIAVIPQGFRF 194

  Fly   190 AVNV-DSPSRGYILEVYDDHFVLPDLGPIGANGLANPRDFETPVAWFDDRDVKDFQVISKFQGRL 253
            :::: |..||||:.|:|..||.|||||||||||||..|||..|.|||:|....::.::.||.|.|
plant   195 SIDLPDGKSRGYVAEIYGAHFQLPDLGPIGANGLAASRDFLAPTAWFEDGLRPEYTIVQKFGGEL 259

  Fly   254 FVAKQNHTVFDVVAWHGNYVPFKYDLSKFMVINSVSFDHCDPSIFTVLTCPSLRAGTAIADFVIF 318
            |.|||:.:.|:||||||||||:||||.||...|:|..||.||||.||||.|:.:.|.|:.|||||
plant   260 FTAKQDFSPFNVVAWHGNYVPYKYDLKKFCPYNTVLLDHGDPSINTVLTAPTDKPGVALLDFVIF 324

  Fly   319 PPRWSVQEHTFRPPYYHRNCMSEFMGLILGKYEAKEDGFAAGGATLHSMMTPHGPDVKCFEGASN 383
            ||||.|.|||||||||||||||||||||.|.||||.|||..|||:|||.|||||||...:| |:.
plant   325 PPRWLVAEHTFRPPYYHRNCMSEFMGLIYGAYEAKADGFLPGGASLHSCMTPHGPDTTTYE-ATI 388

  Fly   384 AK---LVPERVAEGTQAFMFESSLSLAVTKWGEETCQKLDAAYYECWQALKNNF 434
            |:   :.|.::. ||.||||||:|...|..|..|: ..||..||:||..||::|
plant   389 ARVNAMAPSKLT-GTMAFMFESALIPRVCHWALES-PFLDHDYYQCWIGLKSHF 440

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hgoNP_523544.2 hmgA 3..434 CDD:273395 250/440 (57%)
HGONP_200219.1 PLN02658 13..446 CDD:215355 249/439 (57%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 486 1.000 Domainoid score I82
eggNOG 1 0.900 - - E1_COG3508
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H156
Inparanoid 1 1.050 488 1.000 Inparanoid score I330
OMA 1 1.010 - - QHG63167
OrthoDB 1 1.010 - - D795654at2759
OrthoFinder 1 1.000 - - FOG0006563
OrthoInspector 1 1.000 - - oto4012
orthoMCL 1 0.900 - - OOG6_102821
Panther 1 1.100 - - LDO PTHR11056
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X4803
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.840

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