DRSC/TRiP Functional Genomics Resources

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Protein Alignment hgo and Hgd

DIOPT Version :10

Sequence 1:NP_523544.2 Gene:hgo / 34552 FlyBaseID:FBgn0040211 Length:439 Species:Drosophila melanogaster
Sequence 2:NP_038575.2 Gene:Hgd / 15233 MGIID:96078 Length:445 Species:Mus musculus


Alignment Length:435 Identity:294/435 - (67%)
Similarity:346/435 - (79%) Gaps:2/435 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSEYKYLSGFGSHFSSEDERYPNSLPVGQNSPQVCPYKLYAEQLSGSAFTAPRTENMRTWLYRKL 65
            |:|.||:||||:..:|||.|.|.|||.|||:||||||.||||||||||||.||..|.|:||||.|
Mouse     1 MAELKYISGFGNECASEDPRCPGSLPKGQNNPQVCPYNLYAEQLSGSAFTCPRNTNKRSWLYRIL 65

  Fly    66 PSAAHLPFQPFKGAEYFSQNWDEQPPNPNQLRWKPFDLPPKDGKNVNFVEGLHTVCGAGDPRSRH 130
            ||.:|.||:..... :.:.||||..|:|||||||||::|....|.|:||.||:|:|||||.:|.:
Mouse    66 PSVSHKPFESIDQG-HVTHNWDEVGPDPNQLRWKPFEIPKASEKKVDFVSGLYTLCGAGDIKSNN 129

  Fly   131 GLAIHIYSCNGSMDNSAFYNSDGDFLIVPQQGVLDITTEFGRMSVAPNEICVIPQGIRFAVNVDS 195
            |||:||:.||.||:|..|||||||||||||:|.|.|.||||:||:.|||||||.:|:||:|:|..
Mouse   130 GLAVHIFLCNSSMENRCFYNSDGDFLIVPQKGKLLIYTEFGKMSLQPNEICVIQRGMRFSVDVFE 194

  Fly   196 PSRGYILEVYDDHFVLPDLGPIGANGLANPRDFETPVAWFDDRDVK-DFQVISKFQGRLFVAKQN 259
            .:||||||||..||.||||||||||||||||||..||||::||.|. .:.||:||||:||..||:
Mouse   195 ETRGYILEVYGVHFELPDLGPIGANGLANPRDFLIPVAWYEDRRVPGGYTVINKFQGKLFACKQD 259

  Fly   260 HTVFDVVAWHGNYVPFKYDLSKFMVINSVSFDHCDPSIFTVLTCPSLRAGTAIADFVIFPPRWSV 324
            .:.|:||||||||.|:||:|..|||||:|:|||.|||||||||..|||.|.||||||||||||.|
Mouse   260 VSPFNVVAWHGNYTPYKYNLENFMVINAVAFDHADPSIFTVLTAKSLRPGVAIADFVIFPPRWGV 324

  Fly   325 QEHTFRPPYYHRNCMSEFMGLILGKYEAKEDGFAAGGATLHSMMTPHGPDVKCFEGASNAKLVPE 389
            .:.|||||||||||||||||||.|.||||:.||..||.:|||.|||||||..|||.||.|||.||
Mouse   325 ADKTFRPPYYHRNCMSEFMGLIKGHYEAKQGGFLPGGGSLHSAMTPHGPDADCFEKASKAKLEPE 389

  Fly   390 RVAEGTQAFMFESSLSLAVTKWGEETCQKLDAAYYECWQALKNNF 434
            |:|:||.||||||||||||||||.:||..||..||:||:.|:::|
Mouse   390 RIADGTMAFMFESSLSLAVTKWGLKTCSCLDENYYKCWEPLRSHF 434

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hgoNP_523544.2 hmgA 3..434 CDD:273395 292/431 (68%)
HgdNP_038575.2 hmgA 3..434 CDD:273395 292/431 (68%)

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