DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4751 and Rpn8

DIOPT Version :10

Sequence 1:NP_609495.1 Gene:CG4751 / 34551 FlyBaseID:FBgn0032348 Length:1412 Species:Drosophila melanogaster
Sequence 2:NP_001261167.1 Gene:Rpn8 / 37894 FlyBaseID:FBgn0002787 Length:358 Species:Drosophila melanogaster


Alignment Length:401 Identity:79/401 - (19%)
Similarity:130/401 - (32%) Gaps:159/401 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   257 NRNVVHDANMLIESVPFTSVGKLQPFLITVNSSALLLADFHCHLTVREVCGYLGGTWDMNTHTLS 321
            |:.:||...:|.....|..:||:.                    ..:.|.|.|.|.| .:...|.
  Fly     9 NKVIVHPLVLLSVVDHFNRMGKIG--------------------NQKRVVGVLLGCW-RSKGVLD 52

  Fly   322 ITKTYPCRSTRFDRQRAGEVERDIQKMMIQDQLL---------------LVGWYHSHPKFQAEPT 371
            ::.::   :..||     |.::|.....:....|               :|||||:.||      
  Fly    53 VSNSF---AVPFD-----EDDKDKSVWFLDHDYLENMYGMFKKVNARERVVGWYHTGPK------ 103

  Fly   372 LRDCDAQLDYQIKMRGASDLTYTPCVSLIISPYYDENPTLESVVKCIWIVPPNENRQSMEY---- 432
            |...|..::..::       .|.|...|:|   .|..|      |.:.:  |.|...|:|.    
  Fly   104 LHQNDIAINELVR-------RYCPNSVLVI---IDAKP------KDLGL--PTEAYISVEEVHDD 150

  Fly   433 GRPMLMQYSVLPDK---EIPEEVRSE--------------------------------------I 456
            |.|....:..:|.:   |..|||..|                                      :
  Fly   151 GSPTSKTFEHVPSEIGAEEAEEVGVEHLLRDIKDTTVGSLSQKITNQLMGLKGLNAQLRDIKQYL 215

  Fly   457 QLCVDYYSQYRSEMV-KFRNIYN--NDVTYNEKLKNTLYPKFPSK----------QSDKALWNWI 508
            |...|.......::| :.::|:|  .|:| |::...|:|.|...:          :|..||.|.|
  Fly   216 QRVGDSKMPINHQIVYQLQDIFNLLPDIT-NDQFTGTMYVKTNDQMLVVYLASMVRSIIALHNLI 279

  Fly   509 ---CAVLDCEQEDDFIPPKTIKIIDNDDLEVKEEDKPVVLMDLSGDVKINPPKEEQFSEAMGGLE 570
               .|..|.|:.            .:|..|.||::|         |.|....||.:        :
  Fly   280 NNKLANRDAEEG------------KSDSKEAKEKNK---------DSKDKDNKETK--------D 315

  Fly   571 DSGRKAEEESN 581
            ..|:||||:::
  Fly   316 KDGKKAEEKAD 326

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4751NP_609495.1 RAMA 124..220 CDD:465856
MPN_2A_DUB 278..463 CDD:163698 42/244 (17%)
PHA03247 <616..741 CDD:223021
Rpn8NP_001261167.1 MPN_RPN7_8 9..290 CDD:163693 64/334 (19%)
Blue background indicates that the domain is not in the aligned region.

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