DRSC/TRiP Functional Genomics Resources

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Protein Alignment RfC38 and RAD24

DIOPT Version :9

Sequence 1:NP_001285833.1 Gene:RfC38 / 34550 FlyBaseID:FBgn0028700 Length:356 Species:Drosophila melanogaster
Sequence 2:NP_011100.1 Gene:RAD24 / 856920 SGDID:S000000975 Length:659 Species:Saccharomyces cerevisiae


Alignment Length:87 Identity:22/87 - (25%)
Similarity:41/87 - (47%) Gaps:12/87 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 WVDKYRPRELSKLDFHKDQAENLRNLCKQSDFPH-----LMFYGPSGAGKKTRIMCLLREMYGSG 63
            |.:|::|..|.::..||.:.::::........|:     |:..||||..|.|    :::|:....
Yeast    66 WYEKFKPNCLEQVAIHKRKLKDVQEALDAMFLPNAKHRILLLSGPSGCSKST----VIKELSKIL 126

  Fly    64 VERLRSE---TMTFTTPSNRKV 82
            |.:.|..   |...:||:..||
Yeast   127 VPKYRQNSNGTSFRSTPNEHKV 148

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RfC38NP_001285833.1 rfc 3..345 CDD:234763 22/87 (25%)
RAD24NP_011100.1 rad24 1..634 CDD:129690 22/87 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0470
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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