Protein Alignment RfC38 and RFC3

DIOPT Version :9

• Sequence 1: NP_001285833.1
• Gene: RfC38 / 34550
• FlyBaseID: FBgn0028700
• Length: 356
• Species: Drosophila melanogaster
• Sequence 2: NP_014109.1
• Gene: RFC3 / 855426
• SGDID: S000005234
• Length: 340
• Species: Saccharomyces cerevisiae
• Alignment Length: 283
• Identity: 86/283 - (30%)
• Similarity: 127/283 - (44%)
• Gaps: 50/283 - (17%)

  Fly     4 WVDKYRPRELSKLDFHKDQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMYGSGVERLR 68
            ||:||||..|.::....:....:|....:...|||:||||.|.||.:.|:.|.||:||...
Yeast    15 WVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY---- 75

  Fly    69 SETMTFTTPSNRKVEVMTVSSNYHLEVNPSDAGMYDR--TVVIDLIKQVAQTHQIEISGQREFKV 131
                                ||..||:|.||    ||  .||.:.||..|.|.||...|   ||:
Yeast    76 --------------------SNMVLELNASD----DRGIDVVRNQIKDFASTRQIFSKG---FKL 113

  Fly   132 IVISEGDELTKDAQHALRRTMEKYVATCRIIISVNSTSRIIPAIRSRCLGIRVAAPNETEIVSIL 196
            |::.|.|.:|..||:||||.:|:|....|..:..|...::.||:.|||...|.....:..|...:
Yeast   114 IILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRI 178

  Fly   197 QNTCKREGLALPVELAKRVVDKSERNLRRALLMLEAAKVAKAPFTANQEIPDLDWQVFLRETASQ 261
            .|....|.|.|.....|.:::.|..::||.|.:|::.|       |..:.||.|      |.:..
Yeast   179 ANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCK-------ATLDNPDED------EISDD 230

  Fly   262 IISE----QTPAKLEKIRERLYE 280
            :|.|    ..|:.|:.:.:.:.|
Yeast   231 VIYECCGAPRPSDLKAVLKSILE 253

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RfC38	NP_001285833.1	rfc	3..345	CDD:234763	86/283 (30%)
RFC3	NP_014109.1	rfc	11..324	CDD:234763	86/283 (30%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG0470
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	1.810