DRSC/TRiP Functional Genomics Resources

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Protein Alignment RfC38 and RFC5

DIOPT Version :9

Sequence 1:NP_001285833.1 Gene:RfC38 / 34550 FlyBaseID:FBgn0028700 Length:356 Species:Drosophila melanogaster
Sequence 2:NP_009644.3 Gene:RFC5 / 852383 SGDID:S000000291 Length:354 Species:Saccharomyces cerevisiae


Alignment Length:350 Identity:143/350 - (40%)
Similarity:215/350 - (61%) Gaps:10/350 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MALWVDKYRPRELSKLDFHKDQAENLRNLCKQ-SDFPHLMFYGPSGAGKKTRIMCLLREMYGSGV 64
            |:||||||||:.|:.|..:::....|::|..| .|.|||:.|||:|.|||||.|.||..::|.||
Yeast     1 MSLWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGV 65

  Fly    65 ERLRSETMTFTTPSNRKVEVMTVSSNYHLEVNPSDAGMYDRTVVIDLIKQVAQTHQIEISGQRE- 128
            .||:.:...|.|.||||:|:..|||.||||:.|||.|..||.|:.:|:|:|||..|::....:: 
Yeast    66 YRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDG 130

  Fly   129 ----FKVIVISEGDELTKDAQHALRRTMEKYVATCRIIISVNSTSRIIPAIRSRCLGIRVAAPNE 189
                :|.::|:|.:.||||||.|||||||||....|:|:..:|.|.||..|:||||.||..||::
Yeast   131 LAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSRCLLIRCPAPSD 195

  Fly   190 TEIVSILQNTCKREGLALPV-ELAKRVVDKSERNLRRALLMLEA-AKVAKAPFTANQEIPDLDWQ 252
            :||.:||.:....|.:.|.. ::.||:...|..|||.:|||||: |...:....::..|...||.
Yeast   196 SEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMALNNELALKSSSPIIKPDWI 260

  Fly   253 VFLRETASQIISEQTPAKLEKIRERLYELLTQGVPPNLIFRGLVEQL--VNNCDMSIKAKTLEFA 315
            :.:.:...:|:.|::...|.:.|..||:||...:|.|:|.:.|...|  |...:.:.|:..:|::
Yeast   261 IVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANIILKELTFSLLDVETLNTTNKSSIIEYS 325

  Fly   316 TEYEHRMQSGAKHIFHLEAFVAQFM 340
            :.::.|:..|.|.|||||.|:|:.|
Yeast   326 SVFDERLSLGNKAIFHLEGFIAKVM 350

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RfC38NP_001285833.1 rfc 3..345 CDD:234763 141/347 (41%)
RFC5NP_009644.3 PRK12402 3..>243 CDD:237090 112/239 (47%)
HolB 161..351 CDD:223546 63/189 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157343861
Domainoid 1 1.000 151 1.000 Domainoid score I935
eggNOG 1 0.900 - - E1_COG0470
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2188
Inparanoid 1 1.050 256 1.000 Inparanoid score I644
Isobase 1 0.950 - 0 Normalized mean entropy S603
OMA 1 1.010 - - QHG53642
OrthoFinder 1 1.000 - - FOG0004648
OrthoInspector 1 1.000 - - oto99257
orthoMCL 1 0.900 - - OOG6_102480
Panther 1 1.100 - - LDO PTHR11669
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1091
SonicParanoid 1 1.000 - - X3265
TreeFam 1 0.960 - -
1615.740

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