Protein Alignment RfC38 and rfc2

DIOPT Version :9

• Sequence 1: NP_001285833.1
• Gene: RfC38 / 34550
• FlyBaseID: FBgn0028700
• Length: 356
• Species: Drosophila melanogaster
• Sequence 2: NP_001013344.2
• Gene: rfc2 / 503748
• ZFINID: ZDB-GENE-050306-29
• Length: 353
• Species: Danio rerio
• Alignment Length: 340
• Identity: 90/340 - (26%)
• Similarity: 154/340 - (45%)
• Gaps: 66/340 - (19%)

  Fly     4 WVDKYRPRELSKLDFHKDQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMYGSGVERLR 68
            ||:||||.:|:::..:::....|....::.:.|:::..||.|.||.|.|:||.|.:.|..::
Zfish    37 WVEKYRPLKLNEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAMK--- 98

  Fly    69 SETMTFTTPSNRKVEVMTVSSNYHLEVNPS-DAGMYDRTVVIDLIKQVAQTHQIEISGQREFKVI 132
                                 :..||:|.| |.|:   .||.:.||..||.......|:.  |:|
Zfish    99 ---------------------DAVLELNASNDRGI---DVVRNKIKMFAQQKVTLPKGRH--KII 137

  Fly   133 VISEGDELTKDAQHALRRTMEKYVATCRIIISVNSTSRIIPAIRSRCLGIRVAAPNETEIVSILQ 197
            ::.|.|.:|..||.|||||||.|..|.|..::.|::.:||..|:|||..:|.:...:.:|:..|.
Zfish   138 ILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYSKLRDEQIMMRLT 202

  Fly   198 NTCKREGLALPVELAKRVVDKSERNLRRALLMLEAAKV------AKAPFTANQEIPDLDWQVFLR 256
            ...::|.|.:..:..:.::..::.::|:||..|::...      ::..|....|...|..:..|.
Zfish   203 EVVEKENLHVTNDGLEAIIFTAQGDMRQALNNLQSTNSGFGYINSENVFKVCDEPHPLLVKSMLE 267

  Fly   257 ETASQIISEQTPAKLEKIRERLYELLTQGVPPNLIFRGLVEQLVNN----CDMSIKAKTLEFATE 317
            ...:..|.|     ..||.|:|:.|   |..|        |.::.|    |      ||.:.| |
Zfish   268 HCVNANIDE-----AYKIIEQLWSL---GYSP--------EDIIGNIFRVC------KTFQMA-E 309

  Fly   318 Y---EHRMQSGAKHI 329
            |   |:..:.|..|:
Zfish   310 YLKLEYIKEIGYTHM 324

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RfC38	NP_001285833.1	rfc	3..345	CDD:234763	90/340 (26%)
rfc2	NP_001013344.2	PLN03025	35..353	CDD:178596	90/340 (26%)
		AAA	50..184	CDD:99707	48/162 (30%)
		AAA_assoc_2	207..>235	CDD:292811	5/27 (19%)
		Rep_fac_C	273..341	CDD:285713	20/75 (27%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG0470
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1071197at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	4	3.820