Protein Alignment RfC38 and rfc2

DIOPT Version :10

• Sequence 1: NP_609494.1
• Gene: RfC38 / 34550
• FlyBaseID: FBgn0028700
• Length: 356
• Species: Drosophila melanogaster
• Sequence 2: NP_001013344.2
• Gene: rfc2 / 503748
• ZFINID: ZDB-GENE-050306-29
• Length: 353
• Species: Danio rerio
• Alignment Length: 340
• Identity: 90/340 - (26%)
• Similarity: 154/340 - (45%)
• Gaps: 66/340 - (19%)

  Fly     4 WVDKYRPRELSKLDFHKDQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMYGSGVERLR 68
            ||:||||.:|:::..:::....|....::.:.|:::..||.|.||.|.|:||.|.:.|..::
Zfish    37 WVEKYRPLKLNEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAMK--- 98

  Fly    69 SETMTFTTPSNRKVEVMTVSSNYHLEVNPS-DAGMYDRTVVIDLIKQVAQTHQIEISGQREFKVI 132
                                 :..||:|.| |.|:   .||.:.||..||.......|:.  |:|
Zfish    99 ---------------------DAVLELNASNDRGI---DVVRNKIKMFAQQKVTLPKGRH--KII 137

  Fly   133 VISEGDELTKDAQHALRRTMEKYVATCRIIISVNSTSRIIPAIRSRCLGIRVAAPNETEIVSILQ 197
            ::.|.|.:|..||.|||||||.|..|.|..::.|::.:||..|:|||..:|.:...:.:|:..|.
Zfish   138 ILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYSKLRDEQIMMRLT 202

  Fly   198 NTCKREGLALPVELAKRVVDKSERNLRRALLMLEAAKV------AKAPFTANQEIPDLDWQVFLR 256
            ...::|.|.:..:..:.::..::.::|:||..|::...      ::..|....|...|..:..|.
Zfish   203 EVVEKENLHVTNDGLEAIIFTAQGDMRQALNNLQSTNSGFGYINSENVFKVCDEPHPLLVKSMLE 267

  Fly   257 ETASQIISEQTPAKLEKIRERLYELLTQGVPPNLIFRGLVEQLVNN----CDMSIKAKTLEFATE 317
            ...:..|.|     ..||.|:|:.|   |..|        |.::.|    |      ||.:.| |
Zfish   268 HCVNANIDE-----AYKIIEQLWSL---GYSP--------EDIIGNIFRVC------KTFQMA-E 309

  Fly   318 Y---EHRMQSGAKHI 329
            |   |:..:.|..|:
Zfish   310 YLKLEYIKEIGYTHM 324

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RfC38	NP_609494.1	rfc	3..345	CDD:234763	90/340 (26%)
rfc2	NP_001013344.2	PLN03025	35..353	CDD:178596	90/340 (26%)