Protein Alignment RfC38 and rfc5

DIOPT Version :10

• Sequence 1: NP_609494.1
• Gene: RfC38 / 34550
• FlyBaseID: FBgn0028700
• Length: 356
• Species: Drosophila melanogaster
• Sequence 2: NP_001003862.1
• Gene: rfc5 / 445385
• ZFINID: ZDB-GENE-040907-1
• Length: 334
• Species: Danio rerio
• Alignment Length: 359
• Identity: 99/359 - (27%)
• Similarity: 168/359 - (46%)
• Gaps: 68/359 - (18%)

  Fly     4 WVDKYRPRELSKLDFHKDQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMYGSGVERLR 68
            ||:||||:.|..|..|:|....::....:...|||:||||.|.||.:.|:...|::|
Zfish    16 WVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLFYGPPGTGKTSTILACARQLY-------- 72

  Fly    69 SETMTFTTPSNRKVEVMTVSSNYHLEVNPSDAGMYDRTVVIDLIK----QVAQTHQIEISGQREF 129
                     .:::...|.      ||:|.||    ||.  ||:::    ..|.|..|...|   |
Zfish    73 ---------KDKEFNSMV------LELNASD----DRG--IDVVRGPILSFASTRTIFKKG---F 113

  Fly   130 KVIVISEGDELTKDAQHALRRTMEKYVATCRIIISVNSTSRIIPAIRSRCLGIRVAAPNETEIVS 194
            |::::.|.|.:|:|||:||||.:||:....|..:..|..|:||||::|||...|....::.:::.
Zfish   114 KLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQNQMIP 178

  Fly   195 ILQNTCKREGLALPVELAKRVVDKSERNLRRALLMLEAAKVAKAPFT-----------ANQEIPD 248
            .|::..::|.:.:..:..|.:|..|..::||:|.:|::..:|....|           ...:|.:
Zfish   179 RLEHVIQQESIDITPDGMKAIVTLSTGDMRRSLNILQSTHMAYGKVTEETVYTCTGHPLRSDIAN 243

  Fly   249 -LDWQVFLRETA--SQIISEQTPAKLEKIRERLYELLTQGVPPNLIFRGLVEQLVNNCDM--SIK 308
             |||.:....|.  :||:..:|...|     .|:::||:           |..|::..|.  ||:
Zfish   244 ILDWALNKDFTTAYNQILELKTLKGL-----ALHDILTE-----------VHLLIHRVDFPPSIR 292

  Fly   309 AKTLEFATEYEHRMQSGAKHIFHLEAFVAQFMNI 342
            ...|....:.|:|:.||......|.:.||.|..:
Zfish   293 MGLLIKLADIEYRLASGTSEKIQLSSMVAAFQAV 326

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RfC38	NP_609494.1	rfc	3..345	CDD:234763	99/359 (28%)
rfc5	NP_001003862.1	rfc	12..323	CDD:234763	98/354 (28%)