DRSC/TRiP Functional Genomics Resources

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Protein Alignment RfC38 and Rad17

DIOPT Version :10

Sequence 1:NP_609494.1 Gene:RfC38 / 34550 FlyBaseID:FBgn0028700 Length:356 Species:Drosophila melanogaster
Sequence 2:NP_650382.3 Gene:Rad17 / 41779 FlyBaseID:FBgn0025808 Length:535 Species:Drosophila melanogaster


Alignment Length:406 Identity:80/406 - (19%)
Similarity:140/406 - (34%) Gaps:124/406 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 WVDKYRPRELSKLDFHKDQAENLRNLCKQSD-----FPHLM--FYGPSGAGKKTRIMCLLREMYG 61
            |::.:.|.....|..|..:...||:..:..:     ||..|  ..||:||||.|.:..|.:| :|
  Fly    89 WMESFEPATSDDLAVHPKKVGELRDWLRHCEAVRKKFPAQMCLLTGPTGAGKTTTLRVLAKE-FG 152

  Fly    62 SGVERLRSETMTFTTPSNRKVEVM------TVSSNY---HLEVNPSDAGMYDRTVVIDLIKQVAQ 117
            ..::.       :..|.:  .||:      |..::|   |||...|           .|::  |.
  Fly   153 YQLQE-------WINPID--CEVVNTLGDQTTGASYVGSHLEAFKS-----------FLLR--AS 195

  Fly   118 THQIEISGQREFKVIVISEGDELTKDAQHALRRTMEKYVATCR---IIISVNSTSRIIPAIRSRC 179
            .::..:..|.:..::|....:.|..|.:......:|:|.|..:   :.|..::.||.: .|..|.
  Fly   196 RYKSLLDSQNKRLLLVEDFPNVLLSDKEVNFEELLEEYTAYGKSPLVFIVADAKSRGL-NISYRL 259

  Fly   180 LGIRVAAPNETEIVSILQNTCKREGLALPVELAKRVVDKSERNLRRALLMLEAAKVAKAPFTANQ 244
            ...::.|.:..|.:|.  |.           :|..::.||.:..  ..:|.:.....|.|.||  
  Fly   260 FPDQLKAKHRIEHISF--NA-----------IASTIMQKSMKTF--CSVMQQNKATYKVPSTA-- 307

  Fly   245 EIPDLDWQVFLRETASQIISEQTPAKLEKIRERLYELLTQGVPPNLIFRGLVEQLVNNCDMSIKA 309
             :.|           |.::..|     ..||..|..|....:      :|:........::|:.|
  Fly   308 -VVD-----------SIVVGAQ-----GDIRNALINLHLSSL------KGVSSMPTKQLNVSVSA 349

  Fly   310 KTLEFATEYEHRMQSGAKHI--------------------------FH-----LEAFVAQ---FM 340
            |      ..:.:|||..|.|                          .|     .|||..:   |:
  Fly   350 K------GRKKKMQSTLKSIGRDESITLMHALGRVLNPKFNEDKTMLHSPEEITEAFNTEPRNFV 408

  Fly   341 N-IYKKFLSELDMTDD 355
            | :|..:|......||
  Fly   409 NFVYANYLPHFKEIDD 424

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RfC38NP_609494.1 rfc 3..345 CDD:234763 77/394 (20%)
Rad17NP_650382.3 rad24 49..>466 CDD:129690 80/406 (20%)

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