Protein Alignment RfC38 and rfc4

DIOPT Version :9

• Sequence 1: NP_001285833.1
• Gene: RfC38 / 34550
• FlyBaseID: FBgn0028700
• Length: 356
• Species: Drosophila melanogaster
• Sequence 2: NP_999902.2
• Gene: rfc4 / 406435
• ZFINID: ZDB-GENE-040824-3
• Length: 358
• Species: Danio rerio
• Alignment Length: 364
• Identity: 102/364 - (28%)
• Similarity: 160/364 - (43%)
• Gaps: 74/364 - (20%)

  Fly     4 WVDKYRPRELSKLDFHKDQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMYGSGVERLR 68
            ||:||||:.:.::.|.::....|:...:.:|.|:|:||||.|.||.:.|:...||:||..:.|.|
Zfish    35 WVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELYGPDLYRQR 99

  Fly    69 SETMTFTTPSNRKVEVMTVSSNYHLEVNPSD-AGMYDRTVVIDLIKQVAQTHQIEISGQR----- 127
            .                       ||:|.|| .|:   .||.:.:|:.|   |:.::|.|
Zfish   100 V-----------------------LELNASDERGI---QVVREKVKRFA---QLTVAGTRPDGKT 135

  Fly   128 --EFKVIVISEGDELTKDAQHALRRTMEKYVATCRIIISVNSTSRIIPAIRSRCLGIRV-AAPNE 189
              .||:|::.|.|.:|..||.||||||||...|.|..:..|..||||..:.|||...|. ...|:
Zfish   136 CPPFKIIILDEADSMTSAAQAALRRTMEKESRTTRFCLICNYVSRIIEPLTSRCSKFRFKPLAND 200

  Fly   190 TEIVSILQNTCKREGLALPVELAKRVVDKSERNLRRALLMLEAAKVAKAPFTANQEIPDLDWQVF 254
            .:...||: .|::|.|....|....:|..||.:||:|:..|::..      ..|.|
Zfish   201 VQQERILE-ICRKENLKYTTEGVDALVRVSEGDLRKAITFLQSGA------RLNSE--------- 249

  Fly   255 LRETASQIISE---QTPAKL-------------EKIRERLYELLTQGVPPNLIFRGLVEQLVNNC 303
             ||...|.|.|   ..|.|:             ||:...:.:::.||.....:...|.:.::..
Zfish   250 -REITEQTIIEIAGVVPPKVIQSLLHICYKGTFEKLEVAVKDMIDQGYAATNLLNQLHDVIIEE- 312

  Fly   304 DMSIKAKTL--EFATEYEHRMQSGAKHIFHLEAFVAQFM 340
            .:|.|.|::  |...|.:..:..||.....|.:..:..|
Zfish   313 QLSDKQKSVITEKMAEVDKCLADGADEYLQLLSLCSVIM 351

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RfC38	NP_001285833.1	rfc	3..345	CDD:234763	102/364 (28%)
rfc4	NP_999902.2	rfc	34..346	CDD:234763	101/357 (28%)
		AAA	50..196	CDD:99707	58/174 (33%)
		AAA_assoc_2	212..>262	CDD:292811	17/65 (26%)
		Rep_fac_C	281..348	CDD:285713	13/67 (19%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	1	0.910