Protein Alignment RfC38 and RfC4

DIOPT Version :9

• Sequence 1: NP_001285833.1
• Gene: RfC38 / 34550
• FlyBaseID: FBgn0028700
• Length: 356
• Species: Drosophila melanogaster
• Sequence 2: NP_523915.1
• Gene: RfC4 / 38492
• FlyBaseID: FBgn0260985
• Length: 331
• Species: Drosophila melanogaster
• Alignment Length: 354
• Identity: 89/354 - (25%)
• Similarity: 152/354 - (42%)
• Gaps: 67/354 - (18%)

  Fly     4 WVDKYRPRELSKLDFHKDQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMYGSGVERLR 68
            |::||||.:..::..::|....|.....|.:.|:::..||.|.||.|.|.||.|.:.|...:
  Fly    18 WIEKYRPVKFKEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLGDSYK--- 79

  Fly    69 SETMTFTTPSNRKVEVMTVSSNYHLEVNPSDAGMYDRTVVIDLIKQVAQTHQIEISGQREFKVIV 133
                          |.:       ||:|.|:....|  ||.:.||..|| .::.:...|. |:::
  Fly    80 --------------EAV-------LELNASNERGID--VVRNKIKMFAQ-QKVTLPRGRH-KIVI 119

  Fly   134 ISEGDELTKDAQHALRRTMEKYVATCRIIISVNSTSRIIPAIRSRCLGIRVAAPNETEIVSILQN 198
            :.|.|.:|:.||.|||||||.|.:|.|..::.|::.:||..|:|||..:|....::.::::.|..
  Fly   120 LDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIE 184

  Fly   199 TCKREGLALPVELAKRVVDKSERNLRRALLMLEAAKVAKAPFTANQEIPDLDWQVFLRETASQII 263
            ..|.|.|....:..:.:|..::.::|:.|..|::........||              |...::.
  Fly   185 VAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNLQSTAQGFGDITA--------------ENVFKVC 235

  Fly   264 SEQTPAKLE---------------KIRERLYELLTQGVPPNLIFRGLVEQLVN-NCDMSIKAKTL 312
            .|..|..||               ||..:|::|   |..|..|...:...... |.|..:|   |
  Fly   236 DEPHPKLLEEMIHHCAANDIHKAYKILAKLWKL---GYSPEDIIANIFRVCKRINIDEHLK---L 294

  Fly   313 EFATEY---EHRMQSGAKHIFHLEAFVAQ 338
            :|..|.   ..::..|...:..|.|.:|:
  Fly   295 DFIREIGITHMKIIDGINSLLQLTALLAK 323

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RfC38	NP_001285833.1	rfc	3..345	CDD:234763	89/354 (25%)
RfC4	NP_523915.1	PLN03025	16..330	CDD:178596	89/354 (25%)
		AAA	31..165	CDD:99707	49/161 (30%)
		Rep_fac_C	254..322	CDD:285713	16/73 (22%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45455784
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG0470
Homologene	0	0.000	Not matched by this tool.
Inparanoid	1	1.050	55	1.000	Inparanoid score	I449
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1071197at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	P	PTHR11669
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	6	5.900